Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03401 ATGATGAATAAATTAAAAAATGCACTAGTTCCATTGACGAACCTTCAATTCCAACATCGTGGCATAGCAAAAGTCCGTCTAAAATGGGTAAAAAACCGAAGCATCGATCACATCATCGACAAAGAAACCGATCTCAAAGCCGCTTCGCTTCTCAAAGACGCAATCAAGCGTTCCTCCACCGGTTTCCTCACCGCCAAAACCTTCGCCGACTGGCAAAAGCTTCTCGGCCTAACCGTCCCCGTCCTCCGCTTCATGCGCAGGTATCCGACTCTGTTCCACGAGTTCCCTCACCCTCGCTGGAACTCTCTCCCTTGTTTCCGTTTAACCGAAACCGCGGAGCTTTTAGATTCTCAAGAACAGAATATCTACACTCTTCACGAAAACGACACCGTTGAGAGACTCTCTAGGTTACTCATGATGACCAAAACTCGTACTGTTCCTTTACAGTCTCTTTATCCTCTTAAATTTGATCTAGGTTTCCCTGATTCCTTTGAGAAAACCCTAATTCCCAAATATCCTGAAAATTTTCAGTTTGTTAAGGCTCCCAATGGTGTTTCAGCTGTTCGTCTTGCGCGGTGGTGCGATGAATTTGCGGTTTCGGCTTTGCAGAAGAGTAATGAGTGTGAGAGTGATCAGTATAGGGAGTTTAAGAGAGGGAAGACGGCGTTGGTTTTTCCGATGAGGTTTCCGAGAGGCTATGGTGGACAGAAGAAGGTTAGGTTTTGGATGGATGAGTTTCAGAAATTGCCTTATATTTCGCCTTATGCGGATTCGTCTAAGATTGATCCGAAGAGTGATTTGATGGAGAAGCGCGTTGTTGGGGTTTTGCATGAGATTTTGAGTTTGTGTTTGCATAAGAAAACTAAGAGGAACTACTTGAGAAGTTTGAGGGAGGAGTTGAATCTTCCTCATAAGTTTACGAGGATTTTTACGAGATATCCTGGGATATTTTATCTTTCATTGAAGTGTAAAACAACTACTGTTACTCTTAGAGAAGGGTATGCAAGGGGGAAACTGGTGGATCCGCATCCACTTGCTCGTCATAGAGATAAGTTTTACCATGTGATGAGGACGGGGCTTCTTTATCGTGGTGATGGATCGTTGAAAGTTGGGGAAGATGCTTTGATGGTTGATTCTATGGAGAATGATGAAATGGGAGATGGGGATTCTGAGGAGGAAGAGGTTGAAACAAGTGATGAATTCTGCGAGGATGAAGTTTCAGACTCAGATGATAGTAGTAGTGAGTAA 1248 0.4375 MMNKLKNALVPLTNLQFQHRGIAKVRLKWVKNRSIDHIIDKETDLKAASLLKDAIKRSSTGFLTAKTFADWQKLLGLTVPVLRFMRRYPTLFHEFPHPRWNSLPCFRLTETAELLDSQEQNIYTLHENDTVERLSRLLMMTKTRTVPLQSLYPLKFDLGFPDSFEKTLIPKYPENFQFVKAPNGVSAVRLARWCDEFAVSALQKSNECESDQYREFKRGKTALVFPMRFPRGYGGQKKVRFWMDEFQKLPYISPYADSSKIDPKSDLMEKRVVGVLHEILSLCLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLARHRDKFYHVMRTGLLYRGDGSLKVGEDALMVDSMENDEMGDGDSEEEEVETSDEFCEDEVSDSDDSSSE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03401 415 MobiDBLite consensus disorder prediction 378 415 - -
Vifa5g03401 415 Pfam Plant organelle RNA recognition domain 30 359 IPR021099 GO:0003723
Vifa5g03401 415 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 20 393 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03401 Vifa-Chr5 1118675308 1118676555 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03401 - - gmx:100808403 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03401 5 1118675308 1118676555 Vifa5g03401 5 1118675308 1118676555 ECH