Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03397 ATGGCGGTTTCCGAAGAAGAATGCTCTTCCGTCAAGTCTTCTCCTTCTTCTTCTTCTTCCTATTCTCCTTCATCCCCTCCTCCGCGCTATTATCTCTCCAAGTGCGTACTCAGAGGAAGCGCGATTCTCCAAGTCCTCTACGCTAATCTTCGTTCTCCTTCCTCCAACGACGTCGTTTTCGGCAAGGAGACATCTATAGAATTGGTGGTGATTGATGAGGATGGGAATGTACAAACTGTCTGTGATCAGCCTGTTTTTGGCATCATTAAAGATCTTGCTGTATTGCCGTGGAATGAGAAATTTCGTGCTCGTCGCCCGCCACAGACTCAAGGTAAAGACCTCTTGGTTGCTTTATCTGATTCCGGAAAGCTGTCACTGCTCACATTTTGCAATGAAATGAACAGATTTTTTCCTATAACACATGTTCAACTATCTGATCCTGGTCACATGAGGAATATTCCAGGAAGAATGTTGGCAATTGATTCCAGTGGTTGCTTTATTGCTGCCAGTGCTTATGAAGATAGGTTGGCTCTGTTTTCAATGTCGACGTCAATGATCGGGAATGATATCATTGATGAGAGAATAATATATCCCTCTGAAAGTGAAAGGACTGCAACTACTTCCAGAGCCATGCAGAAAACCAGTATAAGCGGTACTATTTGGAGTATGTGCTTTATTTCACTGGATATCCGACAACCAAGCAATGAGCACAATCCTGTATTAGCTATTATTCTAAATAGGAATGGGGCTGCTCAAAATGAATTGCTTTTATTAGAATGGAATGTTAAAGCACACACAGTCTCTGTTATTTCTCAAGATCCTCACAATCCATTATGTGTCTACAAGACTTGCTTGAACATTTTACCCTTTGCAATGGAAGAGCAGACTTATATGGACGACTCTTGTAAATTGCACGATCTTGATGACGAAGGCTTTAGTGTTGCTGCCTGTGCTTTGTTGCAGCTTAGCGATTTTGATCCTATGTGCATTGACAGTGACAGTGGCAATACTAATTCTGGTCCCAAGTACATATGCTCTTGGAGTTGGGAACCAGAAAATCTTAAAGTTCCTAGGATGATCTTTTGTGTAGACACTGGAGAGTTTTTTATGATTGAAGTTTTTGTGGACTATGATGGTCCTAAATTCAGTCTCTCCGAGTGTCTTTATAAAGGTCTACCTTGTAAAGAACTTTTGTGGGTTAAGGGTGGTTATCTAGCATCAATGGTAGAAATGGGGGACAGCGTGGTCCTGAAATTGAGAGATGGAAGACTATCCTTTACAAATCTTATTCAAAACATTTCACCAATCTTCGATGTGGCAGCTGGGGATTATCATGATGAGAAGCACGAGCAAATGTTTGCTTGCTGTGGTGTAACACCTGAGGGGTCATTAAGGATTATTCAAAGTGGTATCAATGTAGAAAAGCTACATAGAACCCCTTCTACTTATGAAGGGGTAGCTGGTACTTGGACTGTTCGGATGAAAATTACGGATTCATATCATTCTTTTCTAGTTCTATCATTTCTTGGGGAGACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATAATGTTGGTTTCCAACCTAATGTCTGTACTTTGGCGTGTGGCCTTGTAAGTGATGGTTTGCTAGTTCAGATTTACCAATCTACTGTTAAGCTTTGTTTGCCTACTAAGGATGGTCATTCTGAAGGCATCCCTTTGTCTTCTCCTATTTGCACATCTTGGTCCCCAGACAATCTGAATATTAGTCTGGGAGCAGTTGGGCATAATTTCATAGTTGTGTCAACTTCTAACCCATGTTTTTTGTTTATCCTCGGGGTTAGAGTGCTATCAGGTTATCAACATGAAATTTATGAAATGCAACATTTGGAACTACAGAACGAATTATCATGTATTTCCATCCCTAGACCTATGTATGGGAAAAAACAATCGAATTCATCCATTTCAGAAATTAATAGCTCAATTGCCTCTTTTGTAAGCGGAGTGGACATCAATAAAACATTTGTTATTGGCACCCATAGGCCTTCTGTTGAAATTTGGTCTTTTGATCCGAATGGTGGAGTCACGGTAGTTGCCTGTGGCACAATTTCATTAAAAAGTACAATGGGGACTGCTAAAAGTTTTTGCATACCTCAAGATGTACGACTCGTATTTGTTGATAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCAACAGAATCGTCTCATTCTTCATCAATAAACGTGGTGGACACTGCTTTATCTTCTATAAATTTGGTAAATTCTATGGCCATGGATTTCAACGTGAGAAATAATCTTCCTTGCATGCTTCAATTGATTGCCATTCGCCGCATTGGCATCACTCCAGTTTTCTTGGTGCCCCTGGATGACACACTTGATGCTGATATAATTGCACTGAGTGATAGAGCTTGGTTGTTGCATAGTGCAAGACACAGCATTTCCTATACTTCTATCTCATTTCAACCATCTTCACATGTAACTCCTGTTTGCTCTATTGACTGTCCAAAAGGAATATTATTTGTTGCTGAAAACAGTTTGCATCTGGTGGAGATGGTCCACAGCAAGAGACTTAGTATGAGGAAGTTTCATTTAGAGGGCACTCCACGGAAGGTCTTGTATCACAACGAAAGTCGGATGTTACTTGTGATGAGGACTGAACTGAGTATTGGTACATGTTTGTCTGACATATGTTGTGTGGACCCCCTAAGTGGGTCAGTAGTATCTTCTTTTCGAATGAAACTCGGAGAAACAGCAACTTCCATGGAATTAATTAGGTTTGGAAGTGAGCAGGTGCTTGTGGTTGGAACTAGTCTGTATTCTGGTCCACCTGTAATCTCCAGTGGTGAAGCTGAGAATGCTAAGGGTCGTCTTCTTGTTCTCTGCCTTGTTCATGTGCAAAATTCAGATAGTGGTTCAATGACCTTCTGTTCGAAGGCAGGGTCTTCATCTCAAAAAACGTCACCTTTCAATGAAATTGTTGGGCATGTTCCTGAACAGCTATCAAGCAGTAGCCTTGCCAGCAGCCCTGATGATAGTAGTTCTGATGGCATCAAACTTGATGAAAATGAAATGTGGCAGTTCCGATTAGCTTGTTCAACTACATGGCATGGAGTAGTACAAGCCATCTGTCCTTATCTTGATCGCTATTTTTTGGCATCTGCTGGCAATACTTTCTATGTCTGTGGTTTCCCAAATGACACTCCGCAAAGAGTGAAGAGGTATGCTGCAGGAAAGACGCGTTTCATGATAAAATCTTTGACTGCATATTTTAGAAGAATTGCAGTTGGTGATTCTCGTGATGGTATCCTTTTCTATTCTTACCACGAGGAAGCAAAAAAATTGGAGCAACTTTACGGTGACCCATCGTTTAGGTTGGTTGCTAATTGCCTTCTCATGGATGAGAATACGGCGATTGTTTCAGATCGTAAAGGAAGCATAGCTGTTTTATGTTCAGATCATTTGGAAGCACCAAATAATGTAAGATCGGAATGCAATTTGAAAATAAGCTGTGCTTATTTCATGGCGGAGATAGCTGTGAGCATCCAAAAGAGCTCATATTCATACAGACTTCCAGCTGATGATGTGTTGTCAGGTGGCATTGGTTTTGGCCCCAAGACAAATGTTGACCCACTACAAAATACTATTCTTGCTTGTACTCTGTTAGGAAGCATAATGATCTTCATCCCTATATCAAGAGAGGAATATGAGCTCTTAGAAGCTGTGCAGGCAAGGCTTGTTGTCCATCATTTGACTGCACCTGTTCTTGGAAATGATCATGATGAGTTTCGGAGCCGGGAAAATCCTGATGGAGTACCCAAGATACTTGATGGAGACATGTTGACTCAGTTTCTGGAGCTTACAAATATGCAGCAAAATAGCATTCTATCTTTGGAACCACCTGATGATATGCTAAAACCAAGTTCGAAGCCACTCCTTTCCCAATTTTCTGTCAACCAAGTCATTCAACTTCTTGAACGAGTTCATTATGCACTGAACTAA 4035 0.4099 MAVSEEECSSVKSSPSSSSSYSPSSPPPRYYLSKCVLRGSAILQVLYANLRSPSSNDVVFGKETSIELVVIDEDGNVQTVCDQPVFGIIKDLAVLPWNEKFRARRPPQTQGKDLLVALSDSGKLSLLTFCNEMNRFFPITHVQLSDPGHMRNIPGRMLAIDSSGCFIAASAYEDRLALFSMSTSMIGNDIIDERIIYPSESERTATTSRAMQKTSISGTIWSMCFISLDIRQPSNEHNPVLAIILNRNGAAQNELLLLEWNVKAHTVSVISQDPHNPLCVYKTCLNILPFAMEEQTYMDDSCKLHDLDDEGFSVAACALLQLSDFDPMCIDSDSGNTNSGPKYICSWSWEPENLKVPRMIFCVDTGEFFMIEVFVDYDGPKFSLSECLYKGLPCKELLWVKGGYLASMVEMGDSVVLKLRDGRLSFTNLIQNISPIFDVAAGDYHDEKHEQMFACCGVTPEGSLRIIQSGINVEKLHRTPSTYEGVAGTWTVRMKITDSYHSFLVLSFLGETRILSVGLSFTDVTDNVGFQPNVCTLACGLVSDGLLVQIYQSTVKLCLPTKDGHSEGIPLSSPICTSWSPDNLNISLGAVGHNFIVVSTSNPCFLFILGVRVLSGYQHEIYEMQHLELQNELSCISIPRPMYGKKQSNSSISEINSSIASFVSGVDINKTFVIGTHRPSVEIWSFDPNGGVTVVACGTISLKSTMGTAKSFCIPQDVRLVFVDKYYVLAGLRNGMLLRFEWPTESSHSSSINVVDTALSSINLVNSMAMDFNVRNNLPCMLQLIAIRRIGITPVFLVPLDDTLDADIIALSDRAWLLHSARHSISYTSISFQPSSHVTPVCSIDCPKGILFVAENSLHLVEMVHSKRLSMRKFHLEGTPRKVLYHNESRMLLVMRTELSIGTCLSDICCVDPLSGSVVSSFRMKLGETATSMELIRFGSEQVLVVGTSLYSGPPVISSGEAENAKGRLLVLCLVHVQNSDSGSMTFCSKAGSSSQKTSPFNEIVGHVPEQLSSSSLASSPDDSSSDGIKLDENEMWQFRLACSTTWHGVVQAICPYLDRYFLASAGNTFYVCGFPNDTPQRVKRYAAGKTRFMIKSLTAYFRRIAVGDSRDGILFYSYHEEAKKLEQLYGDPSFRLVANCLLMDENTAIVSDRKGSIAVLCSDHLEAPNNVRSECNLKISCAYFMAEIAVSIQKSSYSYRLPADDVLSGGIGFGPKTNVDPLQNTILACTLLGSIMIFIPISREEYELLEAVQARLVVHHLTAPVLGNDHDEFRSRENPDGVPKILDGDMLTQFLELTNMQQNSILSLEPPDDMLKPSSKPLLSQFSVNQVIQLLERVHYALN 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03397 1344 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 35 1307 - -
Vifa5g03397 1344 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g03397 1344 MobiDBLite consensus disorder prediction 7 26 - -
Vifa5g03397 1344 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 113 638 IPR018846 -
Vifa5g03397 1344 Gene3D - 41 434 IPR015943 GO:0005515
Vifa5g03397 1344 Gene3D - 471 868 IPR015943 GO:0005515
Vifa5g03397 1344 Pfam CPSF A subunit region 907 1297 IPR004871 GO:0003676|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03397 Vifa-Chr5 1118055466 1118083654 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03397 K12830 - gmx:100806799 2036.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03397 5 1118055466 1118083654 Vifa5g03397 5 1118055466 1118083654 ECH