Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03394 ATGCCAAGACCAAGAACCATGAGACCCAATATCGTTTCTGAGGCAGGGTTGTCTACTAGGTTGAATCAATATTGGGAAAACATTCCATTTCTCACTTCTGCAATAGTTATTATATGTGGAGCAATTTACTTTGTTTGTCTCTTGCTTGGTTATGATTCCTTTGCCGAGATATGCTTCTTGCCCTCTGCCGTTGTAACCCAATTTCAAGTTTACAGGATTTATAGTTCCATTTTTTTCCACCTTTCGTTGCTTCATGTTCTTTTCAACATGATGGCTTTAGTTCCCTTGGGGGCTGAGCTGGAGAGGATCATGGGAACCGTTCGCTTGCTGTATCTTACTATTTTGTTGGCGACGAGCAATGCTATTTTTCATGTTCTCATAGCACTGTTGGTGGGACATAATCCTTTTGTTACGAATGTTTACCTCATGAATGAGTGTGCTGTTGGGTTCTCTGGAGTTCTGTTTTCGATGATTGTTATAGAGACAAGCCTCAGTGGAGTTCAATCGAGGAGTGTATTTGGGTTGTTTAATGTGCCTGCCAAGTGGTATGCATTTTTTTTGTTGGTAGTGTTCCAGCTCCTCATGCAAAATGTCTCCCTACTCGGACACCTTTCTGGCATTGTATCTGGGTTTGCTTATACATATGGTTTTTTTAATTTCCTCATACCTGGGCCATCCTTTTATTCTTCAATTGAAGCCTCCTCCTGGCTTTCATCATGTGTGAGACGTCCTAAATTTATTGTTTGCACTGGTGGAAATCCTGCGGGCTATATCCCTACACATACAAACCAAAACTCAACATCTGGTGGATTATTTTCCGGAAATATTTGGAGGAACCTATCATCACTGATGCCTCGAAGGGAAGTGTCTGCCCAGCCTCAGTCAGTTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTGCTGTTCAAGGTCAAACTGCTTCTGGTCTTCATTCAGATTCAAATCTTCAAGCTAGACTCTTGGAGGACAGTAGTCCTAATCATATTTCAGATTCACCCATTCTGAATACTACTCAAAGGTCAACTGAAGGAAGGCATCCAGTCGATACTGTAGCTACAACAGGATCGGGTGTTCCACATCATCAGGGAGCAGTTGTTTCAGAAGAAGAGATTAAGAAACTTGTAGCAATGGGCTTTGATAAGACACAAGTGGAAGTGGCGCTGGCTGCCGCTGATGGTGATCTTAATGTAGCAGTGGAAATACTCATGACCCAGCAGGGTTAA 1251 0.4309 MPRPRTMRPNIVSEAGLSTRLNQYWENIPFLTSAIVIICGAIYFVCLLLGYDSFAEICFLPSAVVTQFQVYRIYSSIFFHLSLLHVLFNMMALVPLGAELERIMGTVRLLYLTILLATSNAIFHVLIALLVGHNPFVTNVYLMNECAVGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLSGIVSGFAYTYGFFNFLIPGPSFYSSIEASSWLSSCVRRPKFIVCTGGNPAGYIPTHTNQNSTSGGLFSGNIWRNLSSLMPRREVSAQPQSVEDSRFPGRGRTLGAVQGQTASGLHSDSNLQARLLEDSSPNHISDSPILNTTQRSTEGRHPVDTVATTGSGVPHHQGAVVSEEEIKKLVAMGFDKTQVEVALAAADGDLNVAVEILMTQQG 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03394 416 MobiDBLite consensus disorder prediction 333 358 - -
Vifa5g03394 416 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016020
Vifa5g03394 416 SUPERFAMILY UBA-like 367 415 IPR009060 GO:0005515
Vifa5g03394 416 Gene3D - 22 219 IPR035952 -
Vifa5g03394 416 Gene3D - 346 416 - -
Vifa5g03394 416 FunFam RHOMBOID-like protein 13 24 219 - -
Vifa5g03394 416 PANTHER DER1-LIKE PROTEIN, DERLIN 21 309 - -
Vifa5g03394 416 CDD UBA_At3g58460_like 377 412 - -
Vifa5g03394 416 Pfam UBA/TS-N domain 376 411 IPR015940 -
Vifa5g03394 416 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 374 414 IPR015940 -
Vifa5g03394 416 MobiDBLite consensus disorder prediction 333 371 - -
Vifa5g03394 416 SMART uba_6 376 413 IPR015940 -
Vifa5g03394 416 SUPERFAMILY Rhomboid-like 25 221 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03394 Vifa-Chr5 1117456332 1117461595 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03394 - - gmx:100798661 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03394 5 1117456332 1117461595 Vifa5g03394 5 1117456332 1117461595 ECH