Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03378 ATGAAATTCGGGTGCACATTTACGGAGTATCTGCAAGAGGAGCGGGAGTGGTTGATGGATGAGAATTGTGCTCATATTAAATATGACAGGTTGAAAAACGTTTTGAAGAGTTGTCAGAATTGCAAAGATAGCTCTTCTCATGATCATCAACATCATCAGTCATGTAACTGTCAATCTTGCCCAGTATGCGATCAGAAGTTCTTCTCAGAGTTGATGAAGGAAGCATCAGATATAGCAGGATACTTTAGTTCAAGAGTTCAACATCTCCTAAATCTTCATATTGCAAAAGGGCTTCAAAGATATGTATTGTGTTTGCGCCAGTGTTTTAAAAATGATATGGGAGCCCTTGACCAAGAAGGGAGAATTCTAATCGAGTATATTTCCATGAATGCAATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTGCACAGCTCTATGAATGGGGAGAATTTCAAATCTAAGATGCATGCTGAGCATATTGAACTTTTACATTCACCTTGGCTGATTGAATTGGGTGCTTTTTATCTGAATACAAGTGGGCAAGATGGTTGCGAGCTTGACGGAATCCGTGGTCACTTTGCATGTGATTTTAATGTTACTAATGCTGTAATGACATTGACTCTTCCAGATTCTGTTAAGCTTGAGTATGATTTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAATCCGTATGCATTGGGTTGTGGCCACATCTTCTGCAAGTCGTGTGCTTGCTCTGCCGCATCTGTGATGACTTTCCAAGGCCTTAAAGCTGCAACTCCAGAGTCAAAGTGTCCTATATGCAGAGAGGGACGAGTTTATTCCAAGTCAGTCCGAATGTTAGAACTCAATCTTCTTATGAAAAGAAGGTGCAACGATTATTGGAGAGAGAGACTAGCTAGGGAAAGAGCCGTCGCTTTGAAGCAATCAAAGGAGTACTGGAATTTGCAGTCTACTTACGCAGTTGGATTGCTGTAG 984 0.4014 MKFGCTFTEYLQEEREWLMDENCAHIKYDRLKNVLKSCQNCKDSSSHDHQHHQSCNCQSCPVCDQKFFSELMKEASDIAGYFSSRVQHLLNLHIAKGLQRYVLCLRQCFKNDMGALDQEGRILIEYISMNAIAMRKILKKYDKVHSSMNGENFKSKMHAEHIELLHSPWLIELGAFYLNTSGQDGCELDGIRGHFACDFNVTNAVMTLTLPDSVKLEYDLTCAICLDFVFNPYALGCGHIFCKSCACSAASVMTFQGLKAATPESKCPICREGRVYSKSVRMLELNLLMKRRCNDYWRERLARERAVALKQSKEYWNLQSTYAVGLL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03378 327 ProSiteProfiles Zinc finger RING-type profile. 222 271 IPR001841 -
Vifa5g03378 327 ProSiteProfiles SPX domain profile. 1 155 IPR004331 -
Vifa5g03378 327 SUPERFAMILY RING/U-box 214 274 - -
Vifa5g03378 327 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Vifa5g03378 327 SMART ring_2 222 270 IPR001841 -
Vifa5g03378 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Vifa5g03378 327 CDD SPX_BAH1-like 2 150 - -
Vifa5g03378 327 CDD RING-HC_BAH1-like 212 285 - -
Vifa5g03378 327 Pfam RING-type zinc-finger 222 268 IPR027370 -
Vifa5g03378 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 322 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03378 Vifa-Chr5 1114711554 1114714645 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03378 K16275 - gmx:100781704 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03378 5 1114711554 1114714645 Vifa5g03378 5 1114711554 1114714645 ECH