Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03354 ATGGATTCAAAATCCATCTATGGTGTCTCCGTCTCCAATTTCATCACCGTCTTCCTCCTTCTCATCCTCCCGTTCCATTCGGCATTACCTCATAACTCATCTACCGTTCAGATCAACTCCAACTCCATCCTCGTTGCGCTTCTTGATTCTCATTACACCGAACTTTCTGAACTTGTTGAAAAGGCTCTTCTTCTTCAGAAACTCGAAGAAGCTCTTGGGAAACACAATATAACTATCTTCGCTCCCAGAAATCAAGCTCTGGAACGTGACCTAGATCCTGAATTCAAACGGTTTCTTCTCGAGCCGCGTAATTTGAGGTCGCTTCAAACGCTTTTGATGTCGCACATTCTTCCTTCCAGAATCGCTTCACACCACTGGCCAAATACTGATCTCCACCACCATACACTGTCGCACCACCGTCTCCAGTTAACCATAAATCCCTCCGGGAAGAAATCTGTTGATTCCGCTGAGATCCTCAAACCTGACGACGTTATCCGCCCCGACGGCGTCATCCACGGAATCGAACGTCTCATTATCCCCCGCTCCGTACAAGAGGATTTCAACCGGAGAAGAAATTTAGCTGATATATCAGCGATTCTCCCGGAAGGAGCACCGGTGGTAGATCCACGAACTAACAGACTCAAAAAACCAGTTTCCGTCCCTGCCGGTGCTCCACCGGTACTACCAGTCTACGATGCATTGGCACCAGGACCGTCTCTAGCTCCGGCGCCGGCACCAGGACCGGGAGGACCACGTCATCACTTTAACGGAGAACGTCAGGTGAAGGATTTCATCCACACACTTTTACATTACGGAGGTTACAACGAAATGGCGGATATTCTTGTTAACCTAACGTCGCTTGCAACGGAAATGGGACGTTTAGTTTCTGAAGGTTACGTTCTCACCGTTTTGGCACCAAACGACGAAGCAATGGCGAAATTAACCACTGATCAATTGAGTGAACCAGGTGCACCGGAACAGATTATTTACTATCATATAATTCCTGAGTATCAAACGGAGGAGAGTATGTATAACGCCGTGAGAAGATTCGGTAAAGTTAGTTATGATACACTCCGTTTGCCTCATAAGGTTGTTGCTCAGGAATCTGACGGTTCCGTTAAATTCGGTCACGGTGATACTTCCGCTTATTTGTTTGATCCTGATATTTTCACCGACGGGAGAATCTCCGTTCAGGGAATCGACGGTGTTCTTTTACCTCCGGAGGAAGAGAAGGAAGATGAATCCTCAATTCGCCGTGCAAAAACTCCACTTGTTAAAGTTGTTACTAAACCAAAAAGAGGGAAATTGCTGGAACTCGCTTGTAGCATGGTTGGATCTCTTGGAGGAGTCTGCTCATGA 1359 0.4695 MDSKSIYGVSVSNFITVFLLLILPFHSALPHNSSTVQINSNSILVALLDSHYTELSELVEKALLLQKLEEALGKHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPSRIASHHWPNTDLHHHTLSHHRLQLTINPSGKKSVDSAEILKPDDVIRPDGVIHGIERLIIPRSVQEDFNRRRNLADISAILPEGAPVVDPRTNRLKKPVSVPAGAPPVLPVYDALAPGPSLAPAPAPGPGGPRHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVVAQESDGSVKFGHGDTSAYLFDPDIFTDGRISVQGIDGVLLPPEEEKEDESSIRRAKTPLVKVVTKPKRGKLLELACSMVGSLGGVCS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03354 452 Pfam Fasciclin domain 296 406 IPR000782 -
Vifa5g03354 452 Pfam Fasciclin domain 51 180 IPR000782 -
Vifa5g03354 452 SUPERFAMILY FAS1 domain 35 181 IPR036378 -
Vifa5g03354 452 Gene3D FAS1 domain 43 180 IPR036378 -
Vifa5g03354 452 SUPERFAMILY FAS1 domain 240 408 IPR036378 -
Vifa5g03354 452 ProSiteProfiles FAS1/BIgH3 domain profile. 39 178 IPR000782 -
Vifa5g03354 452 ProSiteProfiles FAS1/BIgH3 domain profile. 261 404 IPR000782 -
Vifa5g03354 452 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 11 451 IPR044654 -
Vifa5g03354 452 SMART fasc_3 78 181 IPR000782 -
Vifa5g03354 452 SMART fasc_3 302 407 IPR000782 -
Vifa5g03354 452 FunFam Fasciclin-like arabinogalactan protein 16 256 407 - -
Vifa5g03354 452 Gene3D FAS1 domain 280 407 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03354 Vifa-Chr5 1106604897 1106606944 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03354 - - gmx:100818575 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03354 5 1106604897 1106606944 Vifa5g03354 5 1106604897 1106606944 ECH