Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03345 ATGACCCGATTGACGGAGAAGCTCCGTTTGTCTTCCTTGTTCCTCAAACCGACCCGCTTTCTCTCTCTTCTTTCTCTCTCTACTCTCCGTCTCTGCAAGTCGTTTGCTCGTTTCCTACTCTCCCAAACCCTACCCTTCTTCTCCATGGACAATCTCTTCTCCGATAACGCCGATTACATCTCTGATGAACTTGATTCCTCTGCTTACTCTCTCCGTCCTAATCGTCGCTTGCTTCAAGAAGATGACCGCGATTTCGCCGACGAGAGGGTTTACTTGCTTCCCTACAGGTGGTGGATTGATGCAGAAGTTGAAGCTGATCGTGTAGAAGGTGTTCTGTATACTGTATATTCGAATTGTGATTCTGAGTCAGAGATTTTGCTCCATCTGAAGAAGGAAGAGGACCGTGAGAATATTAAGAATTTGGAGGTGGGATTTTCGGGCCGTCATTATGCTTTGGTTCCCGAAGGAGTTTGGTTGCGTGCTCTCAAAAGGTATAATGATTTTAATAATACAGTGAAAGATTTTGGGAGACTCTTCTATACAGAGGATTGTTTGCCAGATTTGTTCCCCCTCCAACTTAGGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAGATAAGCCAAAAGGATAATGTGCCGGACTACTACAAGAAAGCTTGTGACATTTTCAATTCTGCATATAGCTCATTGTATATTTGGGACTTCTCTGGGCAGACAACCCAGCTCTTAATAAATGACAAAGCCAGGGTGTCAAATGATTCTCCTAGTCAACCTGGAAAAGAGGTTCTTCTGGAGCTACAGGTTCACGGACTTTCTGACTCAATAAGCGGTATTCATAGCAATGGGATGATTTCAGATAGGTCTCAGATGGAATGTTCTTCTGACAGTGGCCCTGTTATGATGAATGGAAGTACTGACAATGTTATCCCCTACGTAACAGCAAACAACTATTTTCCTGGAAGTAGCTATAGAACAGTTCAATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACCTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTATCGTAGAGAGATAAATTATGAAAATCCATTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTCAGAATGCTATGGGTTCCTGGAGCATCACCTGTGCCACCAAGATTTTTCAAGATGAAACTAGCTAACTTTGCTCCTCAGTTTAGTGGTTATATGCAGCATGATTCTCAAGAACTGCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGTCCAGATGAAGAAGTGGCTGAAGAGTATTGGCGAAATCATCTTGCTCGCAATGATTCAATAGTAGTTGATTTGTGCCAAGGTCAGTTCCGATCGACATTGATTTGCCCTATTTGCAAGAAGATTTCTATCACCTTTGACCCTTTTATGTATCTATCTCTGCCATTACCTTCTACAACGATAAGGACCATGACTGTGACTGTCGTGAGCACTGATGGGATCACATTGCCTTCTGCAATTACTGTAACAGTGCCTGAACGTGGAACACTTAAGGATCTGATTGGGGCCTTAACTACTTCTTGTTCTCTGAGAGAGGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAGAATTTTCCGGGCATTTGAGGATCCATCTGATTCATTGGCTGATATTAGAGATCAAGACAAACTTGTCGCTTATCGAGTGCAGAAGTATAATGAAGATAGCATCTTCATTGTTTTTATGCATGAACGTGTGGTGGAAGGTTACGGGAGGGAGAAGTTCGGTATTCCAGTTGTAGCAAGGCTGTCCAGCATTACTTCTGGATATGATGTTCATAAGGAGTTTCTGAATTTAATCAATCCATTTTTGATGCAAAACACTGAGAAAACAATAGATGAATATGATAAGGATGATGACGATACTAAAACACTAAATGAAGTTGATGAAATCGGGGAAACTAATAACTCTGAAGCAATAGAAAGTGATGCAGTCTTGAACAGCGAAGCAGAGGATGACATACATTTTAAGCTGGAGGTAGCTGTTGTATGGTCAGATAAAATGCTTAAAAAGTATGACACTGACCTGCTTGATTCATTGCCTGAGGTTTTCAAGCCCCCGTTTTTCTCCAAGAGAACACAAGAGGCAATATCTATATACAAGTGCCTTGAAGCTTTTTTGAGAGAGGAGCCTCTTGGACCAGAAGACATGTGGTACTGTCCTACCTGCACAAAAACCTCAGCAAGCAACTAA 2346 0.4169 MTRLTEKLRLSSLFLKPTRFLSLLSLSTLRLCKSFARFLLSQTLPFFSMDNLFSDNADYISDELDSSAYSLRPNRRLLQEDDRDFADERVYLLPYRWWIDAEVEADRVEGVLYTVYSNCDSESEILLHLKKEEDRENIKNLEVGFSGRHYALVPEGVWLRALKRYNDFNNTVKDFGRLFYTEDCLPDLFPLQLRIFVSWETSSLVAKISQKDNVPDYYKKACDIFNSAYSSLYIWDFSGQTTQLLINDKARVSNDSPSQPGKEVLLELQVHGLSDSISGIHSNGMISDRSQMECSSDSGPVMMNGSTDNVIPYVTANNYFPGSSYRTVQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRREINYENPLGMNGELALAFGDLLRMLWVPGASPVPPRFFKMKLANFAPQFSGYMQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLICPICKKISITFDPFMYLSLPLPSTTIRTMTVTVVSTDGITLPSAITVTVPERGTLKDLIGALTTSCSLREDETLLVAEIYKNRIFRAFEDPSDSLADIRDQDKLVAYRVQKYNEDSIFIVFMHERVVEGYGREKFGIPVVARLSSITSGYDVHKEFLNLINPFLMQNTEKTIDEYDKDDDDTKTLNEVDEIGETNNSEAIESDAVLNSEAEDDIHFKLEVAVVWSDKMLKKYDTDLLDSLPEVFKPPFFSKRTQEAISIYKCLEAFLREEPLGPEDMWYCPTCTKTSASN 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03345 781 Pfam Ubiquitin carboxyl-terminal hydrolase 334 662 IPR001394 GO:0004843|GO:0016579
Vifa5g03345 781 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 334 781 IPR028889 -
Vifa5g03345 781 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 259 779 - -
Vifa5g03345 781 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 335 350 IPR018200 GO:0004843|GO:0006511
Vifa5g03345 781 SUPERFAMILY Cysteine proteinases 332 777 IPR038765 -
Vifa5g03345 781 Gene3D Cysteine proteinases 322 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03345 Vifa-Chr5 1104802438 1104811077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03345 - K21343 mtr:25499505 1223.76