Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03331 ATGGATCCGGCGATGACGCCGTTGGGGAAAATGCTATTGGAGGAAATCACTCCGGTAGTGATGGTCATCTCCACTCCGGCCGTCGAAGAAACCTGCTTGAAAAACGGCCTCTCGTTTCTCCAGATGCTCACTCCGTTTTGCTCCTTCAACAACATCGACGTGCCAGTGAGGACCGCGAGTGATCAGCCTTATCGTATTCATAAGTTCAAATTGCGGCTCTTCTATGGTTCCGATGTTAAGAAGCCTAATTTGAAGGTAGCTGAACAGCAATTGAAGCAAGTTATTACAGACTCGGGGGAGAAAGTGTTTTCGGAGTTGTGCTTAGATGTTCCGGGATTCAATCATGAAGTTGCAAGCTCTGAAGACAGAGATACACCATCCTGGTTTCAGTTTTTCAATAAAGAGCTTGTCCGCGTGGCTTCCTTTTCAGATCATGAAGCTTTTGACCATCCCGTGGCTTGTCTTTTAGCTGTTTCTTCAAAAGATGAACATCCAATTAGCCGTTTTGTTGACCTTTTTAACACCAACAAGCTTCCTTCCCTTCTAAAAGATGGTTCAATGGATCCAAAGATTTTAAAGCATTACTTGTTAGTGCACGACAATCAAGATGGCCCCGCAGATAGAGCAAGTAAAATATTGACAGAAATGAGGAATACGTTTGGTACAAGTGACTCTTTGCTGCTTTCTATTAATTCTTCCCCTGATGTTCCAATCAAGCATCAAGATAATCCTTGGGCCTCACAAATATACAATGTCCCTCCTAATCAAGATCTTGGTTGCTTTCTTAACATTGATGATATCAATGAGATCAAAGATTTAATGCAAGATTTATCATCTAAGCATATCATTCCTAACATGGAGCAAAAAATCCGTTTGCTCAATCAACAGGTTTCTGCAACACGTAAAGGTTTTAAAAACCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGATGGTGTAGATTCTCTCAATGGTCCTACGTATAACTTTAACTCAATTGAATCCCAGATTCGAGTTTTGGGTGACTATGCTTTCATGTTACGAGATTATGAACTTGCCCTGTCAAATTATCGCCTAATTTCGACAGATTACAAGATTGATAAAGCCTGGAAGCGTTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTTGGATCAATCAAAAAAAGAAGCCGAATATTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGATTATTGGGCCAGCAAAATGCTACACGATGTGGTCTGTGGTGGATAGAAATGTTAAAGGCACGAGACCTATATAAGGAGGCAGCTACAGTTTACTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTAATGCTTGAACAAGCATCATACTGTTATTTGTTGTCTAAACCCTCCATGTCACGCAAATATGGATTTCATCTAGTTCTTTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAACACGCAATTCGAACATACAGAAGCGCTCTTTCTGTTTTTAGAGGAACTACTTGGAGTTATATCAATGATCATGTTCATTTCCATATAGGACAGTGGTATGCTGCTCTTGGTATGTATGATGTAGCTGTAAAGCATATGATGGAAATCTTGGCTTGCAGTCACCAATCCAAAACGACACAAGAGTTATTCCTGAGTGACTTTCTTCAAGTTGTGGAGAAAACAGGGCGGACATTTGAGGTAACAAAACTTCAATTGCCTGTGATCAACATCTCTTCGCTCAAGGTCATATTTGAAGATCACCGAACTTTTGGATCATCCTCAGTTGCTACTAACACTAAAGAAGCCTTGTGGCGTTCTCTGGAAGAAGACATGATACCATCATTTACAGCTGCCAAAACTAATTGGTTGGAGTTGCAATCAAAGCTTATCTCAAAAAAGCACACTCTATCAAATGTTTGTGTTGCAGGAGAAGCTGTGAAGGTTAATATTGAATTCATAAACCCTCTGCAAATCACAATTCCCGTATCTGGTGTTACACTTATATGCGAATATTCTACCAGTACCGATGAACTTACATCAGATGAAAAGGAATTAAGTGTGAAGACTAATAATGAAGTTGACCACTTCAGGGATATGAGCTCGTACAATTCCTCCTTTTTGGTATCTGAGGTTGATTTCTCACTAGGAGGTGGTGAAACTACCATGGTTCAACTATCAGTTACTCCCAAGGAAGTAGGAACTCTTGAAATTCTTGGTGTTCGATGGAAACTATCAGGTACAATAGTTGGCTTCCATAACTTTGAGTTGAGCCACCCAAAGAAGAATATTGTAAAAGGAAGAAGGAAAGCAAAGCGGCCACCTAATGAGAAATTTAAATTTATGGTGATCAAGAGCATACCCAAGATTCAGGGTTCCGTTCACTCTTTACCTGGAAAGGCATATGCTGGAGATTTGCGGAAACTTATGCTGGAGTTGAAGAATCCATCAGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAATCACCCTAGATTCCTGATTATTGGGAATCAAGAAAATGTGAAATTAGAGTTTCCTGGTTGCTTAACAAAAACGATAGGTTCAGTGCAAACTGGTGCAAATGCTAATCCTAATCTCATGTCTGAAACAATCTTTTCGTTTCCGGTGGACACTTCAATTCAAGGGGAAACACCCTTATCTTGGCCTCTTTGGTTTAGGGCTGCTGTTCCCGGGGATATATCTCTTTATATGAGCATTTATTATGAGATTGAAGATATATCAAGTGTCATTAGATATCGTACTCTTCGCTTGCATTACAATGTGCAGGTATTACCATCATTAGATGTCTCATTTCAAATTAGTCCTTCTCGATTAAGAATACAAGATTTTCTTGTTCAATTGGATGTTGTTAACAAGACGAGCTCCGAAAGTTTCCAAGTTTATCAGTTGTCATCCATTGGGCAACACTGGGAAATATCATTACTTCAACCTCCTGATACTATTTTCCCTTCGCAAACGTTGATGGCTGGTCAGGCCATATCCTGTTTCTTCACATTGAAGAACTCAAGGAGATTATCGACATTGGAAAACAACATATCTACCATGCCTGTCGGAAGTGATGTGCTATTGGTTCCTCAATGCAGTCAGGATTTAGTTTACAATTCAAACAATGTACCTTTGGTCAATTTCCATCATTATGAAAGATTGCAGCAGAAAGCATTACATGAGGATCTGGGCGACTTAAATACCGTTGATTTTGTGTTGATATCTCGGCCTCTCAACAATAGTATCAATCCCGGTTTATCTGATCCTCCTCATGTTATGTCTCATCATGCGTGTCATTTAAGTACTGCTAGCACAGGCCCCATTTCATGGCTAGTGGACGGACCTCAGACCTTGCATCACGACTTTTCTGCATCCTTCTGTGAAATAAATCTAAAGATGCATCTTTACAATTCATCTGAAACCACTGCTTTTGTGCACATTGACACCATAGATCTTGATAGTAGTGGTGGACATATCAACAGTGTGAATGCCCTTCCATCGGCAACTCCTGATAACCAAGTAGGGTGGCATGATGTCACACCAGTGAATGAACTAAAAGTATCGTCCAACGCAATCGAAACACAACCAGGAAAGGCACTATTGTTGGAAAGTGTCTCCCCATACATTTGGTCTGCAACAAGCTCGACCAATATCCACCTTGAGCCCATGTCCCCGGCAGAAGTTCCTCTTCAGATATGTGTTTTCTCTCCAGGGACATATGACCTGTCAAATTATTTTTTGAATTGGAAACTTCCGTCCAAGGGTCTGGGAGACAGTGATGAAACGAGGCAGCATTCGGGCAAGTGCCAGGGCTATAAATACTATTTGACTGTGCTCCAGTCCCCTTGA 3870 0.4041 MDPAMTPLGKMLLEEITPVVMVISTPAVEETCLKNGLSFLQMLTPFCSFNNIDVPVRTASDQPYRIHKFKLRLFYGSDVKKPNLKVAEQQLKQVITDSGEKVFSELCLDVPGFNHEVASSEDRDTPSWFQFFNKELVRVASFSDHEAFDHPVACLLAVSSKDEHPISRFVDLFNTNKLPSLLKDGSMDPKILKHYLLVHDNQDGPADRASKILTEMRNTFGTSDSLLLSINSSPDVPIKHQDNPWASQIYNVPPNQDLGCFLNIDDINEIKDLMQDLSSKHIIPNMEQKIRLLNQQVSATRKGFKNQIKNLWWRKGKEDGVDSLNGPTYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSKKEAEYCMENAFNTYLKLGLLGQQNATRCGLWWIEMLKARDLYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMSRKYGFHLVLSGEQYKKCDQIKHAIRTYRSALSVFRGTTWSYINDHVHFHIGQWYAALGMYDVAVKHMMEILACSHQSKTTQELFLSDFLQVVEKTGRTFEVTKLQLPVINISSLKVIFEDHRTFGSSSVATNTKEALWRSLEEDMIPSFTAAKTNWLELQSKLISKKHTLSNVCVAGEAVKVNIEFINPLQITIPVSGVTLICEYSTSTDELTSDEKELSVKTNNEVDHFRDMSSYNSSFLVSEVDFSLGGGETTMVQLSVTPKEVGTLEILGVRWKLSGTIVGFHNFELSHPKKNIVKGRRKAKRPPNEKFKFMVIKSIPKIQGSVHSLPGKAYAGDLRKLMLELKNPSEFPVKNLKMKINHPRFLIIGNQENVKLEFPGCLTKTIGSVQTGANANPNLMSETIFSFPVDTSIQGETPLSWPLWFRAAVPGDISLYMSIYYEIEDISSVIRYRTLRLHYNVQVLPSLDVSFQISPSRLRIQDFLVQLDVVNKTSSESFQVYQLSSIGQHWEISLLQPPDTIFPSQTLMAGQAISCFFTLKNSRRLSTLENNISTMPVGSDVLLVPQCSQDLVYNSNNVPLVNFHHYERLQQKALHEDLGDLNTVDFVLISRPLNNSINPGLSDPPHVMSHHACHLSTASTGPISWLVDGPQTLHHDFSASFCEINLKMHLYNSSETTAFVHIDTIDLDSSGGHINSVNALPSATPDNQVGWHDVTPVNELKVSSNAIETQPGKALLLESVSPYIWSATSSTNIHLEPMSPAEVPLQICVFSPGTYDLSNYFLNWKLPSKGLGDSDETRQHSGKCQGYKYYLTVLQSP 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03331 1289 PANTHER TRANSPORT PROTEIN TRAPP 4 1288 IPR024420 -
Vifa5g03331 1289 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 640 830 IPR013935 -
Vifa5g03331 1289 SUPERFAMILY TPR-like 428 550 IPR011990 GO:0005515
Vifa5g03331 1289 Gene3D Tetratricopeptide repeat domain 328 553 IPR011990 GO:0005515
Vifa5g03331 1289 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 187 518 IPR024420 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03331 K20305 - gmx:100809666 2168.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03331 5 1099532264 1099553915 Vifa5g03331 5 1099532264 1099553915 ECH