Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03313 ATGGCCACCCAGCATCAACCTTCAAGCGCGTTCTCCTTCCTCTCCAAAGGCTGGCGCGAAGTCCGCGACTCAGCCGACGCGGATCTCCGCCTAATGAAAGACCGAGCCAACTCCTTCAAAAACCTAGCCACCTCCTTCGACCGTGAACTCGAGAATTTCTTCAACTCCGCCGCGCCGGGCTTTTCCGTCCCCGCGATGCGTTCTTCTCCTCCCGCCGAGATCGAGTTCGTCAAGAGACTTCAGCCGAAGTTGTCGGAGATTCGTAGGGCTTACTCGTCGCCGGATTTTAGTAAGAAGGTTCTGGAGAAGTGGAGGCCGAGGGCGAAGATTCGGATTGATTTGTCTGCGATTAAGAACATTGTGTCGGAGGAGCTTGGCGACGGGGTTGTGGATTTTGAGAGAGGGGGTAAGGGGAGAAGGTTAGGGTTTTGGGAAGGGTTGAAAGGAGAGACTGAGAGTGGAACTAGTGATTGGGAACCTATTCGAGCGTTGAAAACTAGGATTAGAGAGTTTGAGAAGCGGAGTTCTTCTGTGGAAATTTTTGATGGGGTTAAGAACAGTGAATTTCTTGAGAAACTTAAGTCTAGCTTGAAATCGTTGTGTAAAGAACCCCAAGAATCAAAGGAAGTGCCGCCACTGGATGTACCTGAACTTCTGGCCTACTTTGTTAAACAGTCTGTGCCATTTTTGGATCAACTTGGAGTCAGCAGAGATACATGCGACAAGATAGTTGAAAGCTTGTATAGCAAACGCACGAACCAACTTCTACTGCAGTCTGTTTCTGAAGAAGAATCTTCTTTACTCGGGAATGGAAACATAAATGATGAATTGGATCTGCGAATAGCCAGTGTCCTTCAGAGCACAGGACACCGGTATGAAGGTGGACTCTGGACAGACCGTCCAAAGCAGGATTTCTCTAACAATGAAAGACATGTTGCAATAGTCACAACTGCTAGTCTTCCTTGGATGACGGGAACAGCTGTAAACCCATTATTTCGAGCTGCATATTTATCACAATCTAAAAAGCAGAAAGTCACTCTGCTAGTTCCATGGCTTTGTAAATCAGACCAGGAACTAGTTTATCCCAGTAACCTCACTTTTGCTTCCCCGGAAGAGCAGGAAGGTTACATACGCAACTGGCTTGAGGAAAGAACTGGTTTTAAGGCGGAGTTCAAAATTTCATTTTATCCCGGGAAGTTTTCAAAGGAAAGGCGTAGTATATTACCCGCTGGAGATACTTCTCAATTTATACCATGCAGGGACGCTGACATTGCTATCCTGGAAGAACCAGAACATTTGAATTGGTATCATCATGGGAAGCGTTGGACGGATAAATTCAACCATGTTGTTGGCGTTGTTCACACCAATTACTTAGAATACATAAAGAGGGAGAAAAATGGGGCACTTCAGGCATTCTTCGTGAAACACATCAACAACTGGGTTACAAGAGCATACTGTAACAAGGTTCTTCGTCTCTCAGCTGCTACTCAGGATTTACCCAACTCTATAATTTGCAACGTTCATGGTGTGAATCCCAAGTTCTTAAAAATTGGAGAAATGATGGCTGCAGAGAGAGAGATAGGGCAGAAGGCTTTCACAAAAGGGGCATATTTCTTGGGAAAGATGGTATGGGCAAAGGGATATAAGGAGTTGATAGATTTATTAGGAAAGCATAAGACTGACCTTGATGGCTTCAACATGGATGTATTTGGAAGTGGAGAGGATGCTCATGAAGTTCAGAGTGCAGCTAGAAAGTTGGATTTGAATCTCAACTTTCAGAAAGGACGAGATCACGCAGATGATTCCCTTCACAGGTACAAAGTTTTTATAAATCCTAGCATCAGTGATGTGCTATGCACAGCTACGGCCGAGGCACTTGCCATGGGAAAGTTTGTAGTGTGTGCTGATCATCCCTCAAATGAGTTCTTCAACTCATTTCCCAATTGTTTGATTTACAAGACACCTGAAGACTTTGTAGCAAAAGTAAAAGAAGCATTAGAAAATGAGCCTTATCCTCTCACACCTGAACAAAGATATAAACTCTCTTGGGAAGCTGCAACTCAAAGATTTATGGAATATTCCGATCTAGACCAAATCCTGAACATGGAAAAGGATGGCGTAAAACCAAGTGGAGATAAAGGAAAGCTGATTGGCAAGTCAGCATCAATGCCTAATCTTTCAGAACTAGCTAATGGAGGTTTAGCATTTGCTCACTACTGTCTCACTGGGAACGAGTTCCTGAGATTATGTACCGGAGCAACACCCGGGACACGTGATTATGACAAGCAGCACTGTGAAGACCTTCATCTCTTGCCCCCACAGGTGGAAAATCCTATCTATGGCTGGTAA 2349 0.4474 MATQHQPSSAFSFLSKGWREVRDSADADLRLMKDRANSFKNLATSFDRELENFFNSAAPGFSVPAMRSSPPAEIEFVKRLQPKLSEIRRAYSSPDFSKKVLEKWRPRAKIRIDLSAIKNIVSEELGDGVVDFERGGKGRRLGFWEGLKGETESGTSDWEPIRALKTRIREFEKRSSSVEIFDGVKNSEFLEKLKSSLKSLCKEPQESKEVPPLDVPELLAYFVKQSVPFLDQLGVSRDTCDKIVESLYSKRTNQLLLQSVSEEESSLLGNGNINDELDLRIASVLQSTGHRYEGGLWTDRPKQDFSNNERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSKKQKVTLLVPWLCKSDQELVYPSNLTFASPEEQEGYIRNWLEERTGFKAEFKISFYPGKFSKERRSILPAGDTSQFIPCRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCNKVLRLSAATQDLPNSIICNVHGVNPKFLKIGEMMAAEREIGQKAFTKGAYFLGKMVWAKGYKELIDLLGKHKTDLDGFNMDVFGSGEDAHEVQSAARKLDLNLNFQKGRDHADDSLHRYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFNSFPNCLIYKTPEDFVAKVKEALENEPYPLTPEQRYKLSWEAATQRFMEYSDLDQILNMEKDGVKPSGDKGKLIGKSASMPNLSELANGGLAFAHYCLTGNEFLRLCTGATPGTRDYDKQHCEDLHLLPPQVENPIYGW 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03313 782 Gene3D Glycogen Phosphorylase B; 534 688 - -
Vifa5g03313 782 FunFam Digalactosyldiacylglycerol synthase 1, chloroplastic-like 399 509 - -
Vifa5g03313 782 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 312 692 - -
Vifa5g03313 782 FunFam Digalactosyldiacylglycerol synthase 1, chloroplastic 510 668 - -
Vifa5g03313 782 Pfam Glycosyl transferases group 1 537 672 IPR001296 GO:0016757
Vifa5g03313 782 CDD Glycosyltransferase_GTB-type 441 652 - -
Vifa5g03313 782 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC 1 780 IPR044525 GO:0046481
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03313 Vifa-Chr5 1093734458 1093739818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03313 9 605 Glycosyltransferase AT3G11670 69.344 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03313 K09480 - gmx:100796354 1323.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03313 5 1093734458 1093739818 Vifa5g03313 5 1093734458 1093739818 ECH