Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03292 ATGTCTTACCCTTACATTCTCTTTTCCCTCTCTCTTCTCTCTCTCCTCACATTCTCCTCCTCAATCCCAAACCCAAACACCATTTCTCTTCCACTCTCCCCACTATTCACCAAATCCCAATCCTCAGATCTAATCAACTCCCTCAAAACCGCCGCTACATCTTCTCTAACAAGAGCCCACCACCTCAAAACCCAAAACCCAAATCACAAGAAACCTTCCTCCTCCCCGACCAACACACAAATTTACCCCAAAAGCTACGGCGGTTACTCAATCAACCTCAACTTTGGAACACCGCCGCAAACATTATCCTTCATCCTAGACACAGGTAGCAGCCTCGTATGGTTCCCATGTTCCTCCCACTACCTATGTTCCAACTGCAACTTCCCAAACATCAACCCAACAAAAATCCCTTCCTTCATTCCCAGAAACTCATCCACCTCAAAAATCCTCGGTTGCACAAACTCCAAATGCGGTTACATTTTCGGACCAGACATCGAATCTCGTTGCCGAGGTTGCAACCCAGAATCTCAAAACTGTAGCAACATCACTTGTCCAGCTTACATAATCCAATACGGTTTAGGCTCAACCGCTGGTTTCTTACTATTGGATAATCTCGATTTTACCGGCAAAAAAACAGTGGAAAATTTTCTCGTAGGTTGTTCCATTTTATCTACCCGACAACCCTCCGGTATCGCCGGATTCGGTCGAGGACAAGATTCTCTCCCGTCGCAAATGGGACTTAAGAGATTCTCTTATTGCTTACTTTCTCACCAATTCGACGACTCGCCGGAAAATAGTAACCTCGTTTTGCAGGTTTCTTCCACCGGAGATACAAAAACAAGTGACTTAAACTACACGCCGTTTCGGAAAAACCCATCAACGAACAACGCGGCATTCCTTGAATATTATTACGTGAATCTTAAGATTGTTGTTATTGGAGGGAAACATGTTAAGATTCCGTTAACGGTTTCGGAACCGGGGATAGATGGTAACGGTGGAACCATTGTTGACTCTGGATCAACGTTTACATATATGGAAAAGGAAATCTTCGATTTGGTTTCGCAAGAGTTTGAGAAGCAGCTTTCTAATTATAGCAGAGCGAAAGAAGTTGAAGCTGCATCGGGGTTGAGTCTATGTTTTAACTTCACCGACGTGAAAACGGTGAAGCTTCCGGAGATGGTGTTTGAGTTTAAAGGGGGTGCGAAAATGAAATTACCGGTTGAGAATTATTTTTCTTTGGCGGGTGAAGGGGAGGTGGCGTGTTTGACTGTTATGTCGGATGGAATTTCTGCGCCGGAGAGAAACGGTGGTCCGGCGATTATTTTAGGGAATTATCAGCAGCAGAATTTTAACGTTGAATTTGATTTGGAAAATGATAGGTTTGGATTTGGACCTCAGATTTGTCAAAAAAGTGCTTAA 1419 0.439 MSYPYILFSLSLLSLLTFSSSIPNPNTISLPLSPLFTKSQSSDLINSLKTAATSSLTRAHHLKTQNPNHKKPSSSPTNTQIYPKSYGGYSINLNFGTPPQTLSFILDTGSSLVWFPCSSHYLCSNCNFPNINPTKIPSFIPRNSSTSKILGCTNSKCGYIFGPDIESRCRGCNPESQNCSNITCPAYIIQYGLGSTAGFLLLDNLDFTGKKTVENFLVGCSILSTRQPSGIAGFGRGQDSLPSQMGLKRFSYCLLSHQFDDSPENSNLVLQVSSTGDTKTSDLNYTPFRKNPSTNNAAFLEYYYVNLKIVVIGGKHVKIPLTVSEPGIDGNGGTIVDSGSTFTYMEKEIFDLVSQEFEKQLSNYSRAKEVEAASGLSLCFNFTDVKTVKLPEMVFEFKGGAKMKLPVENYFSLAGEGEVACLTVMSDGISAPERNGGPAIILGNYQQQNFNVEFDLENDRFGFGPQICQKSA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03292 472 Pfam Xylanase inhibitor C-terminal 303 464 IPR032799 -
Vifa5g03292 472 Gene3D Acid Proteases 60 263 IPR021109 -
Vifa5g03292 472 SUPERFAMILY Acid proteases 84 468 IPR021109 -
Vifa5g03292 472 PANTHER OS07G0603500 PROTEIN-RELATED 31 468 - -
Vifa5g03292 472 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Vifa5g03292 472 PRINTS Pepsin (A1) aspartic protease family signature 334 345 IPR001461 GO:0004190|GO:0006508
Vifa5g03292 472 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Vifa5g03292 472 Gene3D Acid Proteases 270 472 IPR021109 -
Vifa5g03292 472 CDD pepsin_A_like_plant 88 468 IPR034161 -
Vifa5g03292 472 FunFam Aspartyl protease family protein 274 471 - -
Vifa5g03292 472 Pfam Xylanase inhibitor N-terminal 89 265 IPR032861 -
Vifa5g03292 472 ProSiteProfiles Peptidase family A1 domain profile. 89 464 IPR033121 -
Vifa5g03292 472 FunFam Aspartic proteinase nepenthesin-2 59 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03292 Vifa-Chr5 1087034418 1087035836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03292 53 470 Miscellaneous Gene Families AT1G77480 23.077 3.53e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03292 - - psat:127125583 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03292 5 1087034418 1087035836 Vifa5g03292 5 1087034418 1087035836 ECH