Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03290 ATGGCCTGCTCAGCTCCATCTGCTTCTCTCCTATCTCCAAACCCTAACACACTCTTCTCTCCCAAATTCTCTTCTCCTCGTCTCTCTTCTCTCTCCATCCCCAATGCCTCCAATTCCCTTCCCAAACTTCGCACTTCCCTCAACCGCCCCTCTTCCTCCCGCCGCAGTTTCGTCGTTAGGGCTTCTAGTGAATTGCCATTAGTTGGGAACTCAGCGCCGGATTTTGAAGCTGAAGCTGTGTTCGATCAGGAGTTTATTAAGGTCAAACTATCTGAGTATATTGGGAAGAAATATGTTATCCTCTTTTTCTACCCATTGGATTTCACATTTGTTTGTCCCACTGAAATCACCGCTTTCAGTGACCGCCATGCAGAATTTGCAGAACTTAATACAGAGATATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCATGGGTTCAAACAGATAGAAAGTCTGGTGGTCTTGGTGACTTGAACTATCCTTTGGTTTCTGATGTCACCAAATCCATATCAAAATCTTACAATGTTCTCATTCCTGATCAAGGGATAGCATTGAGAGGATTGTTCATAATTGACAAGGAAGGGGTTATCCAACATTCTACCATCAACAACCTCGGAATTGGTAGAAGTGTTGACGAGACAAAGAGAACACTCCAGGCCTTGCAGTATGTGCAGGAGAACCCAGACGAAGTTTGCCCTGCTGGGTGGAAGCCTGGTGAGAAGTCCATGAAACCAGACCCCAAACTTAGCAAAGAGTACTTTGCCGCTGTGTAG 780 0.4577 MACSAPSASLLSPNPNTLFSPKFSSPRLSSLSIPNASNSLPKLRTSLNRPSSSRRSFVVRASSELPLVGNSAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFAELNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYNVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFAAV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03290 259 ProSiteProfiles Thioredoxin domain profile. 66 225 IPR013766 -
Vifa5g03290 259 Pfam C-terminal domain of 1-Cys peroxiredoxin 222 256 IPR019479 GO:0051920
Vifa5g03290 259 CDD PRX_Typ2cys 68 241 - -
Vifa5g03290 259 SUPERFAMILY Thioredoxin-like 66 257 IPR036249 -
Vifa5g03290 259 PANTHER THIOREDOXIN PEROXIDASE 62 258 - -
Vifa5g03290 259 Pfam AhpC/TSA family 68 201 IPR000866 GO:0016209|GO:0016491
Vifa5g03290 259 Gene3D Glutaredoxin 60 259 - -
Vifa5g03290 259 FunFam 2-Cys peroxiredoxin BAS1, chloroplastic 60 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03290 Vifa-Chr5 1086551361 1086553582 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03290 K03386 - gmx:100786990 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03290 5 1086551361 1086553582 Vifa5g03290 5 1086551361 1086553582 ECH