Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03276 ATGGGTAACGCTCACTCTCCTCCCACTGATCCTCAATACGTTTCATCATCCAGAGCTTTCACTCAAAAAGGGCTTCAAGACTTAAGATCACTCTTCAATTCCTTAGCATCTCAATCACTGAGCAATGGAAAGTTCATTTCTCCTTCAGTTTTTCAGTCATATTTCAAACTCCATGGCCCTATTGGAGAGAGGATGTTTGATTTAGTTACTCAGGAGAGGAAGGATCAAAAGTTAACTTTTGAAGACCTTGTTATTACTAAAGCTAGTTATGAGAAAGGAACAAAAGATGAAATCGAAGAATTTATATTTCGCTTGTTAGATGTGTCTGGGGATGGTTTTGTAGGGAGGTCGGATTTGGAATCAGTTATGAATGCTATCTTTACCAATATGTTATGCAAAGAAGGTTCTGAATTTGGATCAAGTTCCCATCAAGATATTGTCAACATATTTCTGAATGCTGCCAATTTCTCCATACATGATGAAAATTGCACTGAGGAGGCTATGTCTTTTGAAGATTTCAGAAGTTGGTGTTCTCATCTGCCAACTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCTCCTGATTCAGGACGACCGGGTACTCAAATTCCTAATCTACTGACTCCAAAGGATATTGATTCTAACACTGTACTTTTGAGAAAGGAGTATGCTTGGCATATAGGAGGAGCACTTTCTCAGCACGAGCTGGAAGATTGGAAGCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTCAGTACATTCTTGGGCAACATTTCAAACCACAAAGGCCCAACTGTACTAATTATTAAGGATAAAGATGGTTATATATATGGAGGATATGCTTCTCAACAATGGGAGCGGCATGCTGAATTTTATGGAGACATGAAATGTTACCTTTTTCAACTAAATCCAAAGGCATCTATATTTAGGCCGACTGGAGCAAACAATAATCTACAATGGGTAAAAATCTGCTTCTTTCGAATATTCTAA 993 0.3837 MGNAHSPPTDPQYVSSSRAFTQKGLQDLRSLFNSLASQSLSNGKFISPSVFQSYFKLHGPIGERMFDLVTQERKDQKLTFEDLVITKASYEKGTKDEIEEFIFRLLDVSGDGFVGRSDLESVMNAIFTNMLCKEGSEFGSSSHQDIVNIFLNAANFSIHDENCTEEAMSFEDFRSWCSHLPTVRKLLGSLLLPPDSGRPGTQIPNLLTPKDIDSNTVLLRKEYAWHIGGALSQHELEDWKLLYHSSVNGLSFSTFLGNISNHKGPTVLIIKDKDGYIYGGYASQQWERHAEFYGDMKCYLFQLNPKASIFRPTGANNNLQWVKICFFRIF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03276 330 ProSiteProfiles EF-hand calcium-binding domain profile. 94 129 IPR002048 GO:0005509
Vifa5g03276 330 ProSiteProfiles TLDc domain profile. 217 330 IPR006571 -
Vifa5g03276 330 SUPERFAMILY EF-hand 3 189 IPR011992 -
Vifa5g03276 330 Pfam TLD 241 321 IPR006571 -
Vifa5g03276 330 ProSitePatterns EF-hand calcium-binding domain. 107 119 IPR018247 -
Vifa5g03276 330 Gene3D - 2 189 - -
Vifa5g03276 330 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 42 320 - -
Vifa5g03276 330 SMART 109ultra 216 330 IPR006571 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03276 102 326 EF-hand Containing Proteins AT5G06260 57.080 5.20e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03276 - - gmx:100804508 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03276 5 1080668555 1080671732 Vifa5g03276 5 1080668555 1080671732 ECH