Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03248 ATGACTGATGCTAAATCCGCATCACCCATGTTGGCTCTAGATACCAAATTGTTATGGCCCTTTGTCTGGGATCGTGTTGACACAGTCCTAGACGCGGTAGAAGCTTTGTTTCGACCTATAGTGAAGGCATGTGCGATTTACAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTGCCTATGCCTTGCTTATTCTTTGGAGGCGGGTCTACTCATTTTATGATGAGCCGCGAGGGTGGGGGTTGGATGGATGCTGCAAAGTTTTTGACTGGAGCATCAGCTATGGGGAGCATAGCCATTCCTATAATCCTTAAGCATGCTCACATGATTGAGACTGGGGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACAGTTATGTGTTTCCACCAAGCGAGCCTTGATGATGATTGGTAA 435 0.4552 MTDAKSASPMLALDTKLLWPFVWDRVDTVLDAVEALFRPIVKACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTHFMMSREGGGWMDAAKFLTGASAMGSIAIPIILKHAHMIETGAMLIELVSFFIFICTVMCFHQASLDDDW 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03248 144 Pfam Vacuolar protein sorting 55 40 138 IPR007262 -
Vifa5g03248 144 PANTHER LEPTIN RECEPTOR-RELATED 43 143 IPR007262 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03248 Vifa-Chr5 1074062812 1074067275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03248 41 139 EF-hand Containing Proteins AT1G32410 51.961 1.54e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03248 - - psat:127125618 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03248 5 1074062812 1074067275 Vifa5g03248 5 1074062812 1074067275 ECH