Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03237 ATGGTTCTCTCAAAGGCTATCACCATCTTTATAGCAGCCATTTGTTTGCTGCTAACAAACAATGGCGTTGAAGCATTTCATAAAATATATCCTCATCTTCAATCTGTTTCAACCCTTTCTGTGAGTGAAACGCATAGAACTGCTTACCATTTTCAACCTCCTAGAAACTGGATCAACGGACCTATGTACTATAATGGATACTATCACTTGTTCTACCAATACAATCCTAATGGATCTGTGTGGGGAAACATTGTGTGGGCTCATTCAGTATCAAAGGATCTTATAAATTGGAAAGCACTTGAACCTGCCATATATCCATCCAAACCCTTTGATAAATATGGATGTTGGTCCGGGTCGGCCACTATACTTCCGGATAAAGGACCCGTGATCCAATACACCGGAATCATTGATGAAAAAAACACCCAAGTCCAATGTTACGCTGTACCCGAAGATATAAATGACCCGTTTCTGACAAAATGGGTTAAACCCGATGAAAACAACCCGTTTGTGATCGCTGATTTAGACGTGAATGGTAGCGCATTTCGTGATCCAACAACTGCATGGAAGGGTAAAGACGGAAATTGGAGACTATTAGTTGGTAGTAGAAATAAAGATAAAGGAATGGCTTATTTGTATAGGAGTAAGGATTTTATGAACTGGACTCGGGCCAAAAAGCCGATCCATTCAGCTGATACAGGTATGTGGGAATGCCCCGATTTTTACCCGGTTTTATTGAAAGGTAAAAACGGGTTGGATACATCAATAGAAGGTAATCATGTAACACATGTTTTAAAAAATAGTCTTGATATGACTAGATTTGAGTACTATACATTGGGCACATATTTGTCTAAAAAAGAGAAGTATGTTCCAAGGAAAAATTCAGAGGATAGTTGGGCTGGACTTAGATATGATTATGGAAATTTCTATGCCTCAAAGTCATTTTTTGATTCAAGTAAGAATAGAAGGGTCCTTTGGGGTTGGGCTAATGAGTCTGATACTAAAGAAGATGATGTTAAAAAAGGATGGGCTGGAGTTCAGGCAATACCAAGAACTGTGTGGCTTGATTCTAGTGAAAAACAATTACTAAATTGGCCTGTTGTAGAATTGGATACGCTTAGAGATAAAAAAGTTACTATGAACAATCAAAAACTCGAAAAGGGTAAACATGTTGAAGTAACTGGAATAACTGCTGCTCAGGCAGATGTAGAGGTTACTTTCTCATTTTCAAACTTGGATAAAGCTGAAGCTTATGATCCAAAATGGGTAAATGCACAAGATCTTTGTTCTCAAAAAGGTTCAAAAGTTGAAGGTGGAGTTGGGCCTTTTGGTCTTTTGACTTTGGCTTCAGTAAATCTAGAAGAGTTTACTCCTGTGTTTTTTAGAGTCTTCAAAGCTCCAAACAAACATGTAGTTCTGTTGTGCTCTGATGCCTCTAGTTCTTCTTTGAAGAGTAATATTTACAAGCCATCATTTGCTGGTTTTGTGGATGTGGATTTAGCCACTAATAAACTTTCTCTTAGAAGTTTGATTGATCATTCAGTGGTGGAAACTTTTGGAGAAGGAGGGAAAACAAACATTTTATCTAGGGTTTATCCTGAACTAGCAGTGGCCAATCAAGCTCATTTGTTTGTTTTTAACAACGGTACTGAACCGGTTACTGTGGAGAGTCTTAATGCATGGAGCATGAAGAGTGCTGATATAAAATGA 1707 0.3808 MVLSKAITIFIAAICLLLTNNGVEAFHKIYPHLQSVSTLSVSETHRTAYHFQPPRNWINGPMYYNGYYHLFYQYNPNGSVWGNIVWAHSVSKDLINWKALEPAIYPSKPFDKYGCWSGSATILPDKGPVIQYTGIIDEKNTQVQCYAVPEDINDPFLTKWVKPDENNPFVIADLDVNGSAFRDPTTAWKGKDGNWRLLVGSRNKDKGMAYLYRSKDFMNWTRAKKPIHSADTGMWECPDFYPVLLKGKNGLDTSIEGNHVTHVLKNSLDMTRFEYYTLGTYLSKKEKYVPRKNSEDSWAGLRYDYGNFYASKSFFDSSKNRRVLWGWANESDTKEDDVKKGWAGVQAIPRTVWLDSSEKQLLNWPVVELDTLRDKKVTMNNQKLEKGKHVEVTGITAAQADVEVTFSFSNLDKAEAYDPKWVNAQDLCSQKGSKVEGGVGPFGLLTLASVNLEEFTPVFFRVFKAPNKHVVLLCSDASSSSLKSNIYKPSFAGFVDVDLATNKLSLRSLIDHSVVETFGEGGKTNILSRVYPELAVANQAHLFVFNNGTEPVTVESLNAWSMKSADIK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03237 568 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 377 562 - -
Vifa5g03237 568 Gene3D - 379 562 - -
Vifa5g03237 568 CDD GH32_Fruct1-like 56 354 - -
Vifa5g03237 568 SMART glyco_32 50 522 IPR001362 GO:0004553|GO:0005975
Vifa5g03237 568 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 36 566 - -
Vifa5g03237 568 Pfam Glycosyl hydrolases family 32 N-terminal domain 50 365 IPR013148 -
Vifa5g03237 568 Gene3D Glycosyl hydrolase domain; family 43 55 378 IPR023296 -
Vifa5g03237 568 Pfam Glycosyl hydrolases family 32 C terminal 368 561 IPR013189 -
Vifa5g03237 568 SUPERFAMILY Arabinanase/levansucrase/invertase 40 366 IPR023296 -
Vifa5g03237 568 SUPERFAMILY Concanavalin A-like lectins/glucanases 365 565 IPR013320 -
Vifa5g03237 568 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 54 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03237 Vifa-Chr5 1072420994 1072423490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03237 22 562 Glycoside Hydrolase AT2G36190 62.478 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03237 K01193 - gmx:100799008 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03237 5 1072420994 1072423490 Vifa5g03237 5 1072420994 1072423490 ECH