Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03229 ATGATGGAAGTGCTTCAATTCCCTTCACCTTCAAGCTGTTCATCATCTCCATGTGCTCGCTTAAACTCCAATGATGCTCCACACCAAACTTCCCTTCTTAACAACAATGACCAAACCGAAACTGTTATTCACCGTTTTCAGATTCAACAACACCAGCAGCAGCAACAGATTCAAGATAAGGAAAGAGAAAGAGATCAGCTTTCTATTTTGACTCTTCTGATTGCTACTTTTAGAAAATCTTTGATTGGTTGTAGCACCACTGCTTCTGATATTGCTTCTTCCATGGAAATTGGGTGGCCTTCTAACGTTAGACATGTTGCTCATGTTACTTTTGATCGCTTTCATGGCTTTCTTGGGTTGCCTGTTGAGTTTGAACCTGAAGTTCCAAGAAGACCTCCAAGTGCTAGCACAAGTGTTTTTGGTGTTTCAACAGAATCTATGCAGCTTTCTTTCGATGCCAGAGGAAATAGTGTGCCTACAATACTTCTCTTAATGCAAAGACATCTGTATGCACAAGGAGGTCTGCAGGCTGAAGGAATCTTCAGAATTAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTGAATAGAGGAGTGGTACCGAATGGCATTGATGTGCACTGCTTGGCAGGTCTTATAAAGGCTTGGTTCAGAGAACTTCCAACAGGGATATTGGACCCTCTTTCGCCTGAGCAGGTGATGCAGTCCCAATCAGAAGAAGAATGTGCTCAGCTTGTTAGGCTTCTTCCTCCAACAGAAGCTGCCCTCCTAGATTGGGCAGTCAACCTAATGGCAGATGTTGCTCAACTAGAACATTTGAACAAGATGAATGCACGTAATGTTGCAATGGTTTTTGCACCAAACATGACTCACATGGTAGATCCTTTGACTGCTCTGATGTACGCTGTACAAGTCATGAATTTCCTCAAGACTCTAGTAGTGATGACACTAAAAGAAAGAGAGGAGTCAATCACCAAATTGAACCCCGTATCGAACCTAAATTCCTTTGACGACGACGGGCATCAAAATGATTCACAAGTCCTTTTCAAGGATGAAAGTGAATATGGAAACAATTTTAGTGACGAAGACACAGTATTTGTCACCGCTGAACCTTCGCATCAAAGCCCTATTCATCTTTTCAAAGATGGCTGTGAAACTGAAAGCGGATCCAAAAGTCTGCCAACATCTGCCGAAAATTTTATTTCAAGCGGAAATAGGTTGCTTGTTGACAGTTGTCCTTGCGGTGTTGTCTCTCAAATTTGCTCTCTGGCAATGGGGGATCAAACAAAAATCTGTAACAACAAAAGCCTTCAGTTGAATACTTCTGATACAGACAAGTGTTCAGCAGGAGCGGTGGAGAAGAACAGGGGAATTGCACTTATTGGATGTATAAATTCAAGATCTGAGTTGGCCGATTCTTGGCGTTGA 1434 0.4226 MMEVLQFPSPSSCSSSPCARLNSNDAPHQTSLLNNNDQTETVIHRFQIQQHQQQQQIQDKERERDQLSILTLLIATFRKSLIGCSTTASDIASSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRPPSASTSVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEFVREQLNRGVVPNGIDVHCLAGLIKAWFRELPTGILDPLSPEQVMQSQSEEECAQLVRLLPPTEAALLDWAVNLMADVAQLEHLNKMNARNVAMVFAPNMTHMVDPLTALMYAVQVMNFLKTLVVMTLKEREESITKLNPVSNLNSFDDDGHQNDSQVLFKDESEYGNNFSDEDTVFVTAEPSHQSPIHLFKDGCETESGSKSLPTSAENFISSGNRLLVDSCPCGVVSQICSLAMGDQTKICNNKSLQLNTSDTDKCSAGAVEKNRGIALIGCINSRSELADSWR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03229 477 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g03229 477 Gene3D CRIB domain 92 126 IPR036936 -
Vifa5g03229 477 ProSiteProfiles Rho GTPase-activating proteins domain profile. 142 327 IPR000198 GO:0007165
Vifa5g03229 477 Coils Coil 43 70 - -
Vifa5g03229 477 PANTHER MKIAA1688 PROTEIN 1 387 IPR044785 GO:0005096
Vifa5g03229 477 ProSiteProfiles CRIB domain profile. 97 110 IPR000095 -
Vifa5g03229 477 FunFam Rho GTPase-activating protein 5 127 320 - -
Vifa5g03229 477 Gene3D Rho GTPase activation protein 130 330 IPR008936 -
Vifa5g03229 477 SMART RhoGAP_3 156 319 IPR000198 GO:0007165
Vifa5g03229 477 Pfam RhoGAP domain 159 293 IPR000198 GO:0007165
Vifa5g03229 477 SUPERFAMILY GTPase activation domain, GAP 136 316 IPR008936 -
Vifa5g03229 477 CDD RhoGAP 159 314 - -
Vifa5g03229 477 CDD CRIB 95 135 - -
Vifa5g03229 477 SMART PBD_5 97 131 IPR000095 -
Vifa5g03229 477 Pfam P21-Rho-binding domain 96 122 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03229 Vifa-Chr5 1070450361 1070453643 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03229 - - gmx:100783118 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03229 5 1070450361 1070453643 Vifa5g03229 5 1070450361 1070453643 ECH