Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03227 ATGGAAGCAGTTCTAGCATCCCGCTATTTGTCCACACCATTCTCTCACAATCGAACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTATTCTATCAAACCCTCCTCTTCCCTTTCTTTCCGGAATTCCTTCGCGAAAGAGATATGGGGTTTGGTTCACTCCAAGAGCGTAACTTCCAGAAGAACGGACATGATTCGTCCGGTTGTAGTCAGGGCTGAAATGTTCGGACAGTTAACCTCTAGTCTTGAATCTGCCTGGAACAAACTCAAAGGAGAAGAGGTTTTGACTAAAGAGAATATTGTCGAGCCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGCTGATGTTAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTACTGATAAAGCTGTGGGTGTTGGAGTCACTCGTGGCGTCAAACCCGATCAGCAATTGGTTAAGATTGTTCAAGATGAACTTGTACAATTGATGGGTGGAGAGGTCTCTGAACTGACTTTTGCCAAGTCTGGGCCCACTGTTATTTTATTGGCTGGACTTCAGGGAGTTGGGAAGACAACTGTGTGTGCAAAGTTAGCAACTTATTTCAAGAAACAGGGTAAGAGTTGCATGCTAGTTGCTGGGGATGTTTACAGACCTGCTGCTATCGACCAGCTGACTATTTTGGGCAAGCAGGTGGATGTGCCTGTCTATTCAGCAGGTACTGATGTTAAGCCTTCAGTGATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAAAATTGACGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCTATGATGGACGAGTTAAAAGAAGTGAAACGGGTACTGAATCCAACAGAAATTTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACTGGTGCCATCTTGACAAAGCTGGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGCTGGTAGGACGGGGAGAACGCATGGAAGATCTTGAACCTTTTTACCCCGACCGAATGGCAGGACGTATACTAGGAATGGGAGATGTTCTTTCATTTGTGGAAAAGGCACAAGAAGTTATGCGTCAAGAAGATGCTGAAGACCTGGAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAAATCGTACTGTTGCACAAATGGGTCCAGTGTCTCGAGTCCTTGGGATGATTCCTGGTATGGCAAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGCAGAATATGGAAGTGATAATAGAAGCAATGTCCCCTGAGGAAAGGGAAAAACCAGAACTGTTAGCAGAGTCCCCTGTCAGGAGGAAAAGAGTTGCTCAGAAATCAGGGAAGACAGAGCAGCAGGTAACCCTACTCGTAGTTCAACTATTTAAAATGCGTGTTCAGATGAAGAATCTAATGGGTGTAATGGAAGGTGGATCAATGCCAACACTTAATGATCTTGAGAAAGCACTTAAAACAGAGGAAAAGGCTCCACCTGGCACTGCTAGGAGGAGAAAGAAAGCAGGTTCAAGAAAGCTATTTCCAGGCTCAACTTCGAGGCCACGTCCTCGCGGGAGCAAAAACTGA 1680 0.4458 MEAVLASRYLSTPFSHNRTTTTSSSSSSSSYSIKPSSSLSFRNSFAKEIWGLVHSKSVTSRRTDMIRPVVVRAEMFGQLTSSLESAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVTDKAVGVGVTRGVKPDQQLVKIVQDELVQLMGGEVSELTFAKSGPTVILLAGLQGVGKTTVCAKLATYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYSAGTDVKPSVIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKRVLNPTEILLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLEKKIMSAKFDFNDFLKQNRTVAQMGPVSRVLGMIPGMAKVTPAQIREAEKNLQNMEVIIEAMSPEEREKPELLAESPVRRKRVAQKSGKTEQQVTLLVVQLFKMRVQMKNLMGVMEGGSMPTLNDLEKALKTEEKAPPGTARRRKKAGSRKLFPGSTSRPRPRGSKN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03227 559 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 75 511 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vifa5g03227 559 MobiDBLite consensus disorder prediction 458 481 - -
Vifa5g03227 559 SMART SRP54_3 174 369 IPR000897 GO:0005525|GO:0006614
Vifa5g03227 559 Gene3D - 380 504 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vifa5g03227 559 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 342 355 IPR000897 GO:0005525|GO:0006614
Vifa5g03227 559 SMART SRP54_N_2 75 160 IPR013822 GO:0005525|GO:0006614
Vifa5g03227 559 Pfam SRP54-type protein, helical bundle domain 79 156 IPR013822 GO:0005525|GO:0006614
Vifa5g03227 559 SUPERFAMILY Signal peptide-binding domain 400 501 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vifa5g03227 559 MobiDBLite consensus disorder prediction 523 559 - -
Vifa5g03227 559 Gene3D - 164 358 IPR027417 -
Vifa5g03227 559 SMART AAA_5 173 320 IPR003593 GO:0016887
Vifa5g03227 559 FunFam Signal recognition particle 54 kDa subunit 164 358 - -
Vifa5g03227 559 Pfam Signal peptide binding domain 400 498 IPR004125 GO:0006614|GO:0008312|GO:0048500
Vifa5g03227 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 427 IPR027417 -
Vifa5g03227 559 Hamap Signal recognition particle 54 kDa protein [srp54]. 79 522 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vifa5g03227 559 NCBIfam signal recognition particle protein 77 501 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vifa5g03227 559 MobiDBLite consensus disorder prediction 458 479 - -
Vifa5g03227 559 CDD SRP_G 175 367 - -
Vifa5g03227 559 MobiDBLite consensus disorder prediction 16 37 - -
Vifa5g03227 559 Pfam SRP54-type protein, GTPase domain 174 369 IPR000897 GO:0005525|GO:0006614
Vifa5g03227 559 Gene3D - 78 379 IPR042101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03227 Vifa-Chr5 1069803616 1069809822 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03227 K03106 - gmx:100782581 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03227 5 1069803616 1069809822 Vifa5g03227 5 1069803616 1069809822 ECH