Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03207 ATGGCAAAATGCACCACTTTCCCAATCCTCTTCCTCTTCCTTATCTTCCCACAACCATCACTCTCTCAAGAGAACAATTTTGTTCGACAGCCAGCTAGTCAACTCATCATCACGCCCCATCAACGCTCAAACTCAGAACCTCAACAGGTGCATGTTTCATTGGTGGGGAAAGACAAGATGAGAGTGTCGTGGATAACAGAAGACAAGGAAGCAAAATCTGTGGTGGAGTATGGGAAAAAAGCAGGGGTGTATGATGAAAAAACAATTGGTGAGAAAACCTCGTACCAGTATTTTTTCTACAAATCTGGTAAAATTCATAACGCTGTGATTGGGCCATTGGAGGCAAACACGAGTTACTTTTACAGATGTGGAGGTTTGGGTCCGGAGTTTTCTTTCAAGACACCACCGTCCAAGTTTCCCATTGAATTTGTCATTGTTGGAGACTTGGGACAAACTGAATGGACAGCATCAACCTTAAAACATGTCGAGAAAAAAGACTACGATGTGTTCTTGTTACCAGGAGATTTATCCTATGCAGATTCACAACAACCATTATGGGATTCTTTTGGTCGTTTAGTAGAACCATATGCTAGCAAAAGACCATGGATGGTAACGGAAGGAAACCACGAAATCGAAATCTTTCCATTTATATATCCAAAAGGGTTTGAAGCTTACAACACACGTTGGCCAATGCCATTTAAAGAAAGTGGTTCAAACTCAAATCTCTACTACTCTTTTGAAGCTGTCGGAGTTCATATCATTATGTTAGGTTCATATGCCGATTTTAATGTTGATTCGGAACAATATGAATGGCTTAAACTAGACCTTGCTAAGATCGATAGAGCGAAGACACCTTGGGTTATCACATTGGTGCATGCTCCTTGGTATAATACTAATGAGGCACATCAAGGTGAAGGTGAAGCCATGAGAGAAGCTATGGAAGAGTTGCTTTATAATGCTCGGGTTGATTTGGTTTTCGCTGGACATGTTCATGCATACGAACGCTTCACTCGAATTTATGATAACAAGGTTGATTCGTGCGGTCCAATTTACGTGACAATCGGAGATGGAGGAAACCGCGAGGGACTTGCATTAAAGTTTAAGAGTCCTCCAAGTCCTCTTTCGTTGTTTCGAGAACCAAGCTTTGGTCATGGAAGGTTACGAATACTAAATGAAACTCATGCAGAATGGTCATGGCATCGCAACAACGATAAGGATGCAGTTATAGCTGATAGAATCTGGATAGAGAACTTAAGCAAGGTCCAAGATTGCTGTGATATATCAAATTCTCAACAAGTTGTTAATGAAGAGCTGTAA 1317 0.4108 MAKCTTFPILFLFLIFPQPSLSQENNFVRQPASQLIITPHQRSNSEPQQVHVSLVGKDKMRVSWITEDKEAKSVVEYGKKAGVYDEKTIGEKTSYQYFFYKSGKIHNAVIGPLEANTSYFYRCGGLGPEFSFKTPPSKFPIEFVIVGDLGQTEWTASTLKHVEKKDYDVFLLPGDLSYADSQQPLWDSFGRLVEPYASKRPWMVTEGNHEIEIFPFIYPKGFEAYNTRWPMPFKESGSNSNLYYSFEAVGVHIIMLGSYADFNVDSEQYEWLKLDLAKIDRAKTPWVITLVHAPWYNTNEAHQGEGEAMREAMEELLYNARVDLVFAGHVHAYERFTRIYDNKVDSCGPIYVTIGDGGNREGLALKFKSPPSPLSLFREPSFGHGRLRILNETHAEWSWHRNNDKDAVIADRIWIENLSKVQDCCDISNSQQVVNEEL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03207 438 PANTHER ACID PHOSPHATASE RELATED 16 416 IPR039331 GO:0003993
Vifa5g03207 438 Pfam Calcineurin-like phosphoesterase 143 333 IPR004843 GO:0016787
Vifa5g03207 438 Gene3D - 138 425 IPR029052 -
Vifa5g03207 438 CDD MPP_PAPs 140 417 IPR041792 -
Vifa5g03207 438 Pfam Purple acid Phosphatase, N-terminal domain 47 134 IPR015914 GO:0003993|GO:0046872
Vifa5g03207 438 SUPERFAMILY Metallo-dependent phosphatases 141 405 IPR029052 -
Vifa5g03207 438 Coils Coil 435 438 - -
Vifa5g03207 438 SUPERFAMILY Purple acid phosphatase, N-terminal domain 37 136 IPR008963 GO:0003993|GO:0046872
Vifa5g03207 438 Pfam Iron/zinc purple acid phosphatase-like protein C 348 408 IPR025733 -
Vifa5g03207 438 Gene3D - 46 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03207 Vifa-Chr5 1062216080 1062217794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03207 23 407 Miscellaneous Gene Families AT2G03450 26.068 4.70e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03207 K22390 - gmx:100819446 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03207 5 1062216080 1062217794 Vifa5g03207 5 1062216080 1062217794 ECH