Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03186 ATGGTTTATACAATCTCAGGAATTCGATTTCCCGTTCTTCCTTCTCTGCACAAATCCACCTTACGCTGCGATCGCAGAACTTCATCATCTCACTCTTTTTTTCTCAACAAGAACTCCTCATTCTCTCGGACCTCACTTTACGCAAAGTTTTCCCGCGATTCTGAAACCAAATCTTCCACAATTGCTGAATCTGATAAAGTACTTATTCCTGAAGATCAAGATAACTCTGTATCCTTGACAGATCAACTTGAAAATCCTGATATAACCTCAGAGGATGCGCAGAACTTGGAGGATTTAACCATGAAAGATGAGAATAAATACAATCTTGATGAAGCAGCTAGCAGTTATAGAGAGGTTGGAGACGAGAAGGGTTCTGTTATATCATCATCACTTGTAGATGTTAACACCGACACTGAAACCAAGAAAACATCAATTCATTCAGACGAGAAAGTAAAAGTTGATAAACCTAAAATCATTCCTCCACCTGGTACTGGGCAGAAAATATATGAGATTGATCCACTTTTGCAAGCTCACCGTCAGCATCTTGATTTCCGTTATGCACAATACAAAAGAATTCGGGAGGAAATTGACAAATATGAAGGTGGTCTTGATGCATTTTCTCGTGGGTACGAAAAGTTAGGCTTCACACGCAGTGCCACGGGCATTACTTACAGAGAGTGGGCGCCTGGAGCTAAGTCAGCAGCATTAGTTGGAGATTTCAACAATTGGAATCCAAATGCAGATGTAATGACTAAGGACGCTTTTGGTGTATGGGAGATCTTCTTGCCAAACAATGCCGATGGTTCACCACCAATTCCTCATGGTTCTCGAGTCAAGATCCACATGGATACTCCCTCTGGGATCAAGGACTCAATTCCAGCTTGGATCAAATTCTCTGTACAGGCTCCTGGTGAAATTCCATATAATGGAATATACTATGATCCCCCAGAGGAGGAAAAATATGTCTTCAAACATCCACAGCCAAAACGACCACGGTCAATTAGAATATATGAGTCACACATTGGAATGAGTAGCCCGGAGCCAAAAATCAACACATATGCTAATTTTAGAGATGATGTACTACCTCGCATTAAAAAGCTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCTTATTATGCTAGTTTTGGGTACCATGTTACTAATTTCTTTGCACCTAGCAGTAGGTTTGGAACTCCAGAAGATCTTAAGTCTCTGATAGACAGAGCCCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACATAGCCATGCCTCAAATAATACATTGGATGGCCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGTACGCGGGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGACGAATATAAGTTTGATGGGTTTCGATTTGACGGTGTCACATCAATGATGTACACTCATCATGGACTGCAGGTATCTTTTACTGGAAATTACAGTGAGTATTTTGGTTTAGCAACTGATGTTGAGGCTGTGGTTTACATGATGCTTGTCAATGATCTCATTCATGGGCTCTTCCCTGAAGCTGTTTCAATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCGACGCAAGATGGTGGGATTGGCTTTAACTACCGCTTGCATATGGCTGTTGCAGACAAGTGGATTGAGCTTCTTAAGAAACAAGATGAAGATTGGAGAATGGGTGATATAGTCCACACACTGACAAACAGAAGGTGGCTGGAAAAATGTGTGGTTTATGCTGAAAGTCATGACCAGGCTTTGGTTGGCGATAAGACACTAGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGGCCATCTACTCCTCTAATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACTATGGGTCTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAATTTGGACATCCTGAGTGGATCGATTTTCCAAGAGGTGAGCAACATCTTCCTAATGGCAAAATAGTTCCTGGGAATAACAACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGTGATGCAGATTATCTAAGATATCATGGAATGCAAGAATTTGATCGAGCTATGCAACATCTAGAAGAGAGATATGGTTTCATGACTTCTGAACACCAATACATTTCACGTAAAAATGAAGGTGACAGAGTTATAATCTTCGAAAGAGACAACCTGGTTTTTGTCTTCAATTTTCACTGGACCAACAGTTATTCAGATTACAAGGTCGGCTGTTTAAAGCCAGGCAAATATAAGATTGTCTTGGATTCAGATGATACCTTGTTTGGTGGCTTCAATAGGCTCAATCATACTGCTGAGTACTTCACCTCTGAAGGGTGGTATGATGACCGGCCTCGATCTTTCCTCGTTTATGCACCTTGTAGAACAGCAGTGGTGTATGCCCTTGTGGATAAAGTTGAATCAGAGCCAATTGAACTGTCGGTTGGAGTTGAACCAGATCCAATTGAGCTGTCACTTGAAGTTGAATCAGAGCCAATTCAACAGTCAGTTGAAGTTGAACCATGA 2652 0.4114 MVYTISGIRFPVLPSLHKSTLRCDRRTSSSHSFFLNKNSSFSRTSLYAKFSRDSETKSSTIAESDKVLIPEDQDNSVSLTDQLENPDITSEDAQNLEDLTMKDENKYNLDEAASSYREVGDEKGSVISSSLVDVNTDTETKKTSIHSDEKVKVDKPKIIPPPGTGQKIYEIDPLLQAHRQHLDFRYAQYKRIREEIDKYEGGLDAFSRGYEKLGFTRSATGITYREWAPGAKSAALVGDFNNWNPNADVMTKDAFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKHPQPKRPRSIRIYESHIGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDGHYFHPGTRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVSFTGNYSEYFGLATDVEAVVYMMLVNDLIHGLFPEAVSIGEDVSGMPTFCLPTQDGGIGFNYRLHMAVADKWIELLKKQDEDWRMGDIVHTLTNRRWLEKCVVYAESHDQALVGDKTLAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGEQHLPNGKIVPGNNNSYDKCRRRFDLGDADYLRYHGMQEFDRAMQHLEERYGFMTSEHQYISRKNEGDRVIIFERDNLVFVFNFHWTNSYSDYKVGCLKPGKYKIVLDSDDTLFGGFNRLNHTAEYFTSEGWYDDRPRSFLVYAPCRTAVVYALVDKVESEPIELSVGVEPDPIELSLEVESEPIQQSVEVEP 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03186 883 PIRSF GlgB 84 853 IPR037439 GO:0003844|GO:0005978
Vifa5g03186 883 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 208 320 - -
Vifa5g03186 883 SUPERFAMILY (Trans)glycosidases 324 741 IPR017853 -
Vifa5g03186 883 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 212 295 IPR004193 GO:0004553|GO:0005975
Vifa5g03186 883 CDD AmyAc_bac_euk_BE 317 732 - -
Vifa5g03186 883 Pfam Alpha amylase, C-terminal all-beta domain 750 844 IPR006048 GO:0003824|GO:0005975|GO:0043169
Vifa5g03186 883 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 746 846 - -
Vifa5g03186 883 SUPERFAMILY E set domains 206 315 IPR014756 -
Vifa5g03186 883 Gene3D Immunoglobulins 208 320 IPR013783 -
Vifa5g03186 883 Pfam Alpha amylase, catalytic domain 361 432 IPR006047 GO:0005975
Vifa5g03186 883 Gene3D - 746 852 IPR013780 -
Vifa5g03186 883 Gene3D Glycosidases 172 741 - -
Vifa5g03186 883 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 140 846 - -
Vifa5g03186 883 SMART aamy 351 711 IPR006047 GO:0005975
Vifa5g03186 883 SUPERFAMILY Glycosyl hydrolase domain 746 846 - -
Vifa5g03186 883 CDD E_set_GBE_euk_N 220 313 - -
Vifa5g03186 883 FunFam 1,4-alpha-glucan branching enzyme 315 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03186 Vifa-Chr5 1057973134 1057996053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03186 28 846 Glycoside Hydrolase AT5G03650 74.818 0.0 1298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03186 K00700 - gmx:100785968 1548.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03186 5 1057973134 1057996053 Vifa5g03186 5 1057973134 1057996053 ECH