Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03177 ATGAGAGGAATAACATCTTGTTACAAAGAACATGCTATTAGAGTTTCTGATTTGTATTGTTCAAGACCTTCAAATTCAAATCATTCTTATCTTGTTCCAAAGCTCAATAACAATCCTTCAACCCAAAATTCAGTTACTTGCATCTATAAACTCTCGATTCAAAAACAAGAACTTCTCATCACAGTAACATGGACCAAGAAACTCATTCGTCAAGGTTTCATCATAAACATTGATTCCGATTTTGTTAACGTTATCTCGAAAAACAGAGGAGCTGAAACGTTTCAGTTTCAAATCTTTGAAGTTAAACTCATATGGGATCTTTCTACAGCTAGATACGATGAAGGTCCAGAACCGGTTGAAGGATTTTACATCGTTGTTTTGGTGAATACTGAATTGGGTCTTTTCCTCGGAGACAAAGACAAAGAAGAAGAATTATCATTACAAGAGAAGAAAACACACGGAGCGAGAATTACAATGGTTTCAAGAAGTGAAAGATTTTCTGGTACAAGTGTTTATGCAACAAAGGCAAAGTTTTCAGAAACGGGGATTTTACACGAGATAATGATAAAGTGCGGTGTTGAAGATGGATCAAAGAGTAACATATTGTGTTTGTTTATGGATAAGAAGATGGTGTTTCAAGTGAAGAGATTGAAGTGGAATTTTCGCGGGAATCAAACGATTTTCGTGGATGGACAAGAAGTGGTTTGGATAGTAAGATTGTGGTTGGAAGAAGAGAAGAATTTGCAGAAACAGAAGGAACAAGATAGAATTGGATTTTCTTTGTTGATATATGGATGTAAGAAACCTGATTAA 813 0.3518 MRGITSCYKEHAIRVSDLYCSRPSNSNHSYLVPKLNNNPSTQNSVTCIYKLSIQKQELLITVTWTKKLIRQGFIINIDSDFVNVISKNRGAETFQFQIFEVKLIWDLSTARYDEGPEPVEGFYIVVLVNTELGLFLGDKDKEEELSLQEKKTHGARITMVSRSERFSGTSVYATKAKFSETGILHEIMIKCGVEDGSKSNILCLFMDKKMVFQVKRLKWNFRGNQTIFVDGQEVVWIVRLWLEEEKNLQKQKEQDRIGFSLLIYGCKKPD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03177 270 Pfam Plant protein of unknown function (DUF868) 40 247 IPR008586 -
Vifa5g03177 270 PANTHER EXPRESSED PROTEIN 4 243 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03177 Vifa-Chr5 1051999007 1051999910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03177 1 242 EF-hand Containing Proteins AT3G04860 33.594 1.19e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03177 - - pvu:PHAVU_001G186900g 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03177 5 1051999007 1051999910 Vifa5g03177 5 1051999007 1051999910 ECH