Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03149 ATGCATTCCAGTCCCATGCTCATTGAAGAACCGATTCGGATGATCTCAATACTCGAACCTTCGAAATACAGCTTTTTTCCTGCAATGACGAAGATTGTTGGTACCTTGGGACCTAAATCTCGTTCCGTCGATGTTATTTCTTCTTGCCTCAAAGCTGGAATGTCTGTGGCTCGTTTTGATTTCTCTTGGGGTGATGCTGAATATCACCAGGAGACTTTGGAGAATTTGAAGACTGCTATCAAAACTACTAAGAAGCTCTGTGCTGTTATGTTGGACACAGTGGGTGCTGAGATGCAGGTTGTTAACAAAAACGAGACGGCGATTTCACTTCAGGCTGATAGTCAGGTTGTTCTAACTCCTGATCAGGGACAAGAAGCTTCTTCAGAGATACTGCCTATCAATTTTGATGGACTGGCCAAGTCAGTGAAGACGGGAGACACCATTTTCGTTGGTCAATACTTGTTCACAGGAAGTGAAACTACTTCTGTTTGGCTAGAGGTGGCTGAAGTTACAGGGCAGGATGTTGTTTGTACCATAAAAAATTCAGCAACATTAGCTGGGGCATTGTTTACCTTGCATGCATCTCAAATTCATATTGATTTGCCTACCCTCACTGAGAAAGACAAGGAGGTTATAAGCACCTGGGGAGTAAAAAACAAAATTGATTTTCTATCATTGTCATATACTAGGCATGCTGAAGATGTTCGCCAGGCACGTGAATTCCTTTCTACATTAGGTGATCTCAGCCAAACTCAAATTTTCGCGAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAGATTCTACAAGAAGCAGATGGTATTATCCTTTCCCGTGGGAATTTGGGCATTGATCTTCCACCAGAGAAGGTATTTTACTTCCAGAAGTCTGCCCTTTACAAGTGTAATATGGCTGGGAAGCCTGCTGTTCTCACACGTGTTGTGGATAGCATGACTGACAACTTGAGACCAACTCGTGCGGAAGCCACAGATGTTGCCAATGCTGTTTTAGATGGTAGTGATGCAATTCTTTTGGGTGCTGAGACTTTACGTGGGTTATACCCTGTTGAGACTATTTCTACTGTTGGCAAGATTTGTGCAGAAGCTGAGAAAGTTTTCAATCAAGACCTTTATTTTAAGAGGACAGTCAAACATGTTGGAGAACCCATGACCCATTTGGAATCCATAGCATCCTCTGCGGTACGTGCAGCTATTAAGGTGAAAGCTTCTGTTATCATTTGCTTCACTTCATCTGGAAGGGCTGCAAGATTGATAGCAAAGTACAGGCCAACGATGCCGGTTCTCTCTGTTGTGATACCCAGACTTAAGACAAATCAACTAAAATGGAGCTTTAGTGGAGCTTTTGAGGACCAACTACCAATACATTTGTGGGAAAGCTTATTTACTTCTAATGCAAGGCAATCACTTATTGTAAGAGGTCTCTTTCCCATGCTTGCTGATCCTCGACATCCTGCTGAATCAACAAGTGCCAGTAATGAGTCTATTCTGAAGGTAGCACTTGATCATGGGAAAACATCAGGAGTCATCAAGCCACATGATAGAGTTGTTATTTGCCAGAAAGTTGGTGATGCATCTGTTGTTAAGATTATCGAGCTTGAAGATTAA 1629 0.423 MHSSPMLIEEPIRMISILEPSKYSFFPAMTKIVGTLGPKSRSVDVISSCLKAGMSVARFDFSWGDAEYHQETLENLKTAIKTTKKLCAVMLDTVGAEMQVVNKNETAISLQADSQVVLTPDQGQEASSEILPINFDGLAKSVKTGDTIFVGQYLFTGSETTSVWLEVAEVTGQDVVCTIKNSATLAGALFTLHASQIHIDLPTLTEKDKEVISTWGVKNKIDFLSLSYTRHAEDVRQAREFLSTLGDLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFYFQKSALYKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGKICAEAEKVFNQDLYFKRTVKHVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEDQLPIHLWESLFTSNARQSLIVRGLFPMLADPRHPAESTSASNESILKVALDHGKTSGVIKPHDRVVICQKVGDASVVKIIELED 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03149 542 Gene3D - 363 540 IPR036918 -
Vifa5g03149 542 NCBIfam pyruvate kinase 30 440 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 Pfam Pyruvate kinase, alpha/beta domain 395 537 IPR015795 -
Vifa5g03149 542 FunFam Pyruvate kinase 371 528 - -
Vifa5g03149 542 PANTHER PYRUVATE KINASE 28 527 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 FunFam Pyruvate kinase 96 202 - -
Vifa5g03149 542 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 Gene3D - 30 362 IPR040442 -
Vifa5g03149 542 Gene3D - 97 201 IPR015806 GO:0004743|GO:0006096
Vifa5g03149 542 SUPERFAMILY PK beta-barrel domain-like 103 186 IPR011037 -
Vifa5g03149 542 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vifa5g03149 542 SUPERFAMILY PK C-terminal domain-like 358 535 IPR036918 -
Vifa5g03149 542 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 8 375 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03149 Vifa-Chr5 1043191406 1043200382 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03149 K00873 - gmx:100781158 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03149 5 1043191406 1043200382 Vifa5g03149 5 1043191406 1043200382 ECH