Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03130 ATGGAATTGTTTGTTAGAATGGTGGAGGAGGGCATGGAATTAATGGATTTCTCTTTGAGTAGTGGGATTAATGCTTGTAGTTTGCTTGCTGATTATGAGGTCAGCAAGCAGATGCATGGATTTGCAATCAAGTTTGGGTTTGGATCAAATGTTTGTGTTGAAGGGGCTTTGCTTGACATGTACACAAGGTGTGGGAGGATGGTAGATGCTAAGAAGATGTTTAGCATGTGGGAAGAATTGGAGAAGGATAGCTCTGTTGTTTGGACTTCCATGATTTGTGGCTATACTCGAAACGGGCAAACAAATGAGGCAATTTCTCTTTTCCATCTTGGTCATTCTAAAGGGAAATTGATTATCGATGAAGTTGCACTATCTACAATGCCTGGTCTTTGTGGAACCGTTGGCTATCATGATATGGGCAAGCAAATCCATTGTCAAGTTATTAAATTTGGCTTCCATTCTAAAGTGCAAATTGGAAATGCTGTTGTTAGTATGTATTTTAAATGTGGGAATGTAGATGATGCAATTAAGATGTTCAGTGGCATGTCCTCTACCGATATAGTTTCATGGAATATTTTGATTTCTGGGTATGTTATGCACAGGCAGGGCGATAGAGCATTGGGAATATGGTTGAAAATGCAGGTAGAGGGCATAACGCCTGATGAAGTTACCTTCATTTTGATAATTTCAGCATACAAGCAAACTAATTTGAATTTGGTTGATGACTGTCGTAGTTTGTTTGATTCAATGAGAACTGTTTATCACATTGAACCAACATCTCAACATTATTCGTCCTTCATCAGTGTTTTAGGTCACTGGGGTCTTTTGGAAGAGGCGCTGGAAACTATCAATAAGATGCCTTTTAAGCCTTCTGCTTTTGTTTGGCGTGCTTTGCTCGATGGTTGCAGACTCCATAAGAATACAATGCTTGAAAAATGGACTGCCAAGAATATTCTTGCCCTGGAACCTAAAGATCCATCTACTTATATACTTGTTTCAAATTTGTATTCATCTTCTGGGAGATGGGATTGCGCTGAGATGACTAGGAAAAATATGAGAGAAAAGGGATTTCACAAATACCCGGCTCAAAGTTGGATCATTTGTCAAAAGAAAATGCATTCATTCTATGCAAGAGATAGATCTCATCCGCAAGACAGAGACATATATAGTGGGCTGGAGATTCTAATCTTTGAGTGCCAAAAAGTTGGATATGAACCTGACACGCGCTTTGTTCTCCACGAAGTGGAGGAGCACCAAAAGAAACAATTTCTATTCCATCACAGTTCAAAACTAGCAGCAACTTATGGAATATTGATGACAAAGCCAGGGAAGCCCATCCGGATTGTAAAGAACATTCTTCTTTGTGGGGACTGCCATACATTCTTGAAATATGTATCTATTGTCACTAAGAGGGACATTTTTCTAAGAGATTCTTCAGGATTTCACTGTTTCTCTAATGGCCAGTGCTCGTGTAAAGACCAATGGTGA 1488 0.3938 MELFVRMVEEGMELMDFSLSSGINACSLLADYEVSKQMHGFAIKFGFGSNVCVEGALLDMYTRCGRMVDAKKMFSMWEELEKDSSVVWTSMICGYTRNGQTNEAISLFHLGHSKGKLIIDEVALSTMPGLCGTVGYHDMGKQIHCQVIKFGFHSKVQIGNAVVSMYFKCGNVDDAIKMFSGMSSTDIVSWNILISGYVMHRQGDRALGIWLKMQVEGITPDEVTFILIISAYKQTNLNLVDDCRSLFDSMRTVYHIEPTSQHYSSFISVLGHWGLLEEALETINKMPFKPSAFVWRALLDGCRLHKNTMLEKWTAKNILALEPKDPSTYILVSNLYSSSGRWDCAEMTRKNMREKGFHKYPAQSWIICQKKMHSFYARDRSHPQDRDIYSGLEILIFECQKVGYEPDTRFVLHEVEEHQKKQFLFHHSSKLAATYGILMTKPGKPIRIVKNILLCGDCHTFLKYVSIVTKRDIFLRDSSGFHCFSNGQCSCKDQW 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03130 495 NCBIfam pentatricopeptide repeat 160 188 IPR002885 -
Vifa5g03130 495 NCBIfam pentatricopeptide repeat 86 110 IPR002885 -
Vifa5g03130 495 NCBIfam pentatricopeptide repeat 188 222 IPR002885 -
Vifa5g03130 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Vifa5g03130 495 Pfam PPR repeat 160 183 IPR002885 -
Vifa5g03130 495 Pfam PPR repeat 86 110 IPR002885 -
Vifa5g03130 495 Pfam PPR repeat 263 286 IPR002885 -
Vifa5g03130 495 Pfam PPR repeat 56 79 IPR002885 -
Vifa5g03130 495 Pfam DYW family of nucleic acid deaminases 403 495 IPR032867 GO:0008270
Vifa5g03130 495 FunFam Pentatricopeptide repeat-containing protein103 136 236 - -
Vifa5g03130 495 FunFam Pentatricopeptide repeat-containing protein103 237 387 - -
Vifa5g03130 495 Pfam E motif 309 366 IPR046848 -
Vifa5g03130 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Vifa5g03130 495 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 432 IPR046960 GO:0003723|GO:0009451
Vifa5g03130 495 Pfam PPR repeat family 186 232 IPR002885 -
Vifa5g03130 495 Gene3D Tetratricopeptide repeat domain 135 237 IPR011990 GO:0005515
Vifa5g03130 495 Gene3D Tetratricopeptide repeat domain 14 134 IPR011990 GO:0005515
Vifa5g03130 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Vifa5g03130 495 Gene3D Tetratricopeptide repeat domain 238 381 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03130 Vifa-Chr5 1036828114 1036829601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03130 1 495 Glycoside Hydrolase AT3G49170 36.800 7.73e-114 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03130 - - psat:127125721 952.584