Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03127 ATGTTTCGTGAATTCATCAAGATGGATAAAGCCTCACGCAAAATGGCTGGTGAAATTTCTGAACCTGGCTCACGAGCCATTGAGATTGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCAACAATTAAACTCACTTGGGCCAAAGTTGAAGTCATCCATCCATGTCTCATTTGTCAGTGAATGTGGCCTTATGGAGGCTGGTCTGGACTATGGTGGATTATCAAAAGAGTTTTTGACTGACATAACAAAAGAAGCATTTGCCCCTGAATACGGGCTTTTTTCCCAAACCTCAACTTCAGATAGCCTTCTAATTCCCACTGCTTCTGCAAGATTTTTGGACAATGGTCTTCAGATGATCGAGTTCCTTGGAAGAATAGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCTTTCTCGCATGTGTTTGTACAAAAGCTTTTAGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAGTCTTATGTATGTCAAGAATTATGATGGTGATGTCAAGGAGCTCTTTTTTGACTTCACAGTTACTGAAGAATCATTTGGCAAAAGGCATGTGGTTGAGCTCAAGTCTGGTGGCAAAGATATTTCTGTGACAAATGAAAACAAGATGCAGTACATACATGCGATGGCGGACTACAAACTCAACCAACAGATATTTCCCTTTTCAAATGCATTTTATAGAGGGCTAACTGATCTTATATCGCAATCCTGGTTGAAATTATTCAACGCAAGTGAGTTTAATCAGTTGCTTTCAGGTGGCAATTACGATATTGACGTCGATGATTTTAAAAATAATACACGATACACTGGTGGTTACAGTGAGGGGAGCCGGACAATCAAAATCTTTTGGGAGGTGATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGGTTCTTAAATTTGTCACCAGTTGCTCTCGTGCTCCATTACTAGGGTTCAAACACTTGCAGCCACCTTTTACCATCCACAAGGTTGCATGTGATGTCCCTCTTTGGGCAACATTTGGAGGACAAGATGTAGACCGGCTTCCATCAGCTTCAACCTGCTACAACACCCTTAAGCTTCCAACATACAAACGTCCAGGAACTTTGAGAACAAAGCTTTTATATGCTATCAATTCAAATGCCGGATTTGAACTTTCTTAA 1188 0.4015 MFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFQQLNSLGPKLKSSIHVSFVSECGLMEAGLDYGGLSKEFLTDITKEAFAPEYGLFSQTSTSDSLLIPTASARFLDNGLQMIEFLGRIVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRSLMYVKNYDGDVKELFFDFTVTEESFGKRHVVELKSGGKDISVTNENKMQYIHAMADYKLNQQIFPFSNAFYRGLTDLISQSWLKLFNASEFNQLLSGGNYDIDVDDFKNNTRYTGGYSEGSRTIKIFWEVIKGFEPKERCMVLKFVTSCSRAPLLGFKHLQPPFTIHKVACDVPLWATFGGQDVDRLPSASTCYNTLKLPTYKRPGTLRTKLLYAINSNAGFELS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03127 395 FunFam Putative Ubiquitin-protein ligase E3C 153 232 - -
Vifa5g03127 395 SUPERFAMILY Hect, E3 ligase catalytic domain 27 388 IPR035983 GO:0004842
Vifa5g03127 395 CDD HECTc 27 393 IPR000569 GO:0004842
Vifa5g03127 395 Gene3D Hect, E3 ligase catalytic domain 270 394 - -
Vifa5g03127 395 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 395 IPR044611 GO:0000209|GO:0061630
Vifa5g03127 395 Pfam HECT-domain (ubiquitin-transferase) 82 395 IPR000569 GO:0004842
Vifa5g03127 395 FunFam E3 ubiquitin-protein ligase UPL7 270 394 - -
Vifa5g03127 395 Gene3D Hect, E3 ligase catalytic domain 153 232 - -
Vifa5g03127 395 Gene3D Hect, E3 ligase catalytic domains 29 267 - -
Vifa5g03127 395 ProSiteProfiles HECT domain profile. 51 395 IPR000569 GO:0004842
Vifa5g03127 395 SMART hect_3 45 395 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03127 Vifa-Chr5 1036050599 1036055139 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03127 K10588 - gmx:100805744 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03127 5 1036050599 1036055139 Vifa5g03127 5 1036050599 1036055139 ECH