Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03124 ATGGCGGGAGGTAGTAGTAGAAAAAGTCGAAGACGGAGAAGATCCGATGACTCTGCATCGGAGTCAGACTCCGACAACCGCCGGCGAACTAGTCGGAGGACACGGCGGGATTCAGATGATTCCAGTGAAGAAGATGATAGAAGTGGAAGAAAGAAAAAGTCTTCAAGAACAATCACAGAAGAGGAAATTTCACAGTATATGGCGAAAAAAGCTCATAGAAAGGCTACCAAAGTTGCTAAAATATTGAAGACTAATACAGTATCGGGTTATTCCAATGACTCTAATCCATTTGGTGATTCTAATCTCAATGAAAAGTTTGTTTGGCGCAAGAAGATTGAACGCGATGTTACTCAAGGTGTATCTATTGAATCCTTTTCAGTTAAGGCTGAGAAGAAAAGACAAGTGGATAGGATGGCAGAAATTGAAAAGGTGAAGAAGAGGAGAGAGGAAAGGGCTCTTGAGAAAGCACAACATGAAGAAGAAATGGCATTGTTAGCTAGAGAACGTGCTCGAGCCGAGTTCCAGGACTGGGAAAAAAAGGAAGAGGAGTTCCATTTTGATCAAAGCAAAGTTAGATCAGAAATTAGATTGCGTGAAGGGCGTGCCAGGCCAATCGATGTCCTAACCAAGCACCTTAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTTAAAGAAATGAGTGAACTTCGTGATGACATCAAAATGCATCTGGATCTTGACCGGGCAACACCAACTCATGTGGAATATTGGGAGGCTCTCCTTGTGGTGTGTGATTGGGAACTAGCTGAATCTCAGAAAAAGGATGCAATTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCTGAACAAAGGGGTTTGCATTCTAGTGTTGAGCCAGATGTGAAGGACCTCTTACATGGAAAGTCACATACAGAGTTGGAAGCCCTACAGGTTCACATTGAGTCTGAGATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAAGCCATTTTAAAACACCTCGGCATATACAAGGCCAAGGCTTGTTTAAAGGAAATACATGCTAAAATGTTACGTAAGCATTTGCAACGTCTTGAGCAACCATTGGAGGATGAAGATGAACCGGAGAGTGCTCATGACATGGTACCTGATGAGGCATGTACTGAGGATGATGCTAAAGATGAGTCATTTTCACCAGAGCCCATTAGAGAGAATCAAGAAGCTGAAGACGAGGCTGGATCATTTTCACCACAACTGTTGCATGATGATGAAAATGAAGAAGCTATTGATCCTGAAGAGGACAGAGCTATACTGGAGCGGAAACGTATGGCTGTAATAGAAGAGCAACAAAGACGAATTCAGGAAGCAATGGCATCAAAGCCTGCTCCATCGGAAGATAATTTAGAGATGAAAGCCATAAAAGCTATGGGAGTTATGGAGGATGGAGATGCGGTGTTTGGATCTGGAGCTGAAGTGAGCCTTGATTCCCAGGTTTATTGGTGGCATGACAAGTACAGACCAAGGAAGCCGAAGTATTTCAACCGCGTTCACACCGGATATGAATGGAACAAATATAACCAGACTCACTATGATCATGACAACCCACCTCCAAAGATTGTGCAAGGGTACAAATTTAATATTTTCTATCCTGACCTTGTAGACAAGATAAAAGCCCCTAACTACACTATTGAGAAGGATGGCAGCAACGGAGAGACTTGCATTATCAGATTCCATGCAGGGCCACCATATGAAGATATAGCTTTTCGCATTGTAAACAAAGAATGGGAATATTCTCACAAGAAAGGTTTTAAGTGCACATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGCAGATAG 1908 0.4308 MAGGSSRKSRRRRRSDDSASESDSDNRRRTSRRTRRDSDDSSEEDDRSGRKKKSSRTITEEEISQYMAKKAHRKATKVAKILKTNTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGVSIESFSVKAEKKRQVDRMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVKEMSELRDDIKMHLDLDRATPTHVEYWEALLVVCDWELAESQKKDAIDRARVRGEEPPAELLAEQRGLHSSVEPDVKDLLHGKSHTELEALQVHIESEMRTGTAKVVEYWEAILKHLGIYKAKACLKEIHAKMLRKHLQRLEQPLEDEDEPESAHDMVPDEACTEDDAKDESFSPEPIRENQEAEDEAGSFSPQLLHDDENEEAIDPEEDRAILERKRMAVIEEQQRRIQEAMASKPAPSEDNLEMKAIKAMGVMEDGDAVFGSGAEVSLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPNYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03124 635 Coils Coil 139 175 - -
Vifa5g03124 635 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 38 635 - -
Vifa5g03124 635 MobiDBLite consensus disorder prediction 10 69 - -
Vifa5g03124 635 MobiDBLite consensus disorder prediction 1 75 - -
Vifa5g03124 635 MobiDBLite consensus disorder prediction 390 434 - -
Vifa5g03124 635 Pfam Cactus-binding C-terminus of cactin protein 511 635 IPR019134 GO:0005515
Vifa5g03124 635 Pfam Conserved mid region of cactin 167 364 IPR018816 -
Vifa5g03124 635 MobiDBLite consensus disorder prediction 377 438 - -
Vifa5g03124 635 SMART CactinC_cactus_3 511 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03124 Vifa-Chr5 1035544411 1035549708 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03124 K25058 - gmx:100780087 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03124 5 1035544411 1035549708 Vifa5g03124 5 1035544411 1035549708 ECH