Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03118 ATGAAACTCTTGGAAAAAGATTTTGCTCTAAACCAAACAGGAACCGTTAAAATAATCGCAGAAGAACCCGACGATGTATGGCTCCTTTACAACCTCATCACCGTAGGCGACGTCGTTACCGCCGACACCACACGCAAAGTCCACCTCGAATCAAACAAAAACACCGCATCACGTGTCAAACTCACCCTTCATCTTAAAGTCACCAGCCGCGACTTTCACAAAGACTCTTCCACCCTCCGCGTCCATGGCCGCAACCTTGAATCAAACCAACATGTCGCTGCTGGTTCTTTCCACACTCTATCTCTCGAAAGAGATAAACCCTTTGAACTTCGGAAAAAGATATGGGGTCCACACGCCGTTGAAGCCTTATCAGATGCTACAGAGAATTCTTCATCTTCTTCTTCTGATGCGAATCTTGCTGTTATTGTTCTTCAACAACACCAAGCGGAGATTCACTTGCTTGGAAAAGGGGTCACCACTCGTTGTACCAAGATTGAAGCCTCTTCACATTCACATAAAAAATCTTCTTCATCTAACGTGTTTCTTCGTGATGTTTTTGCGGCTTTTGTGAAGCATGTGGATTTCAAAGTTGTGAAAACCGTGGTGATAGCAGGAGATAGAGATAACCCAACTATTTTCCGTAGGTTTCTTTTGTCGGAAGCGAGGAGGTTAAGGATGAGGTGGATCGAAGAGAACAAGTCGCGTGTCGTTGTTGTAGGATCAAGGTGTAATAGTAATACTAATAACAACAAAGGTAACTATGACTTTGATTTGAGGGAAGTTTTCAACGACGTAGCGGTGATGAATTTGATAAAGGACAGCACTTTAGGGTTAGAGATTAGGGTTTTCAAGGAATTATGGGACATGGTGTGCAACAATTCAGATCGTGTATGTTATGGACCAAAGCATGTAGAGAGTGCACATGAGATGAAAGCGATTGAAACACTTTTGATAAGTGATGATCTTTATAGGAATGAAGAGATTGATATGAGGAAAAAATATGTTGGTTTGGTGAAATCAGTGAAAGAGGGTGGAGGAAAGGCTTTGGTGTATTCTTCCATGCATGTTTCGACACCACAGTTGGATCAGCTAACTGGTGTTGCTGCCATACTCAGATTTCCATTGCCTGGTCTTCAAGATATTGATGATGATGATCATGTTTAG 1164 0.4235 MKLLEKDFALNQTGTVKIIAEEPDDVWLLYNLITVGDVVTADTTRKVHLESNKNTASRVKLTLHLKVTSRDFHKDSSTLRVHGRNLESNQHVAAGSFHTLSLERDKPFELRKKIWGPHAVEALSDATENSSSSSSDANLAVIVLQQHQAEIHLLGKGVTTRCTKIEASSHSHKKSSSSNVFLRDVFAAFVKHVDFKVVKTVVIAGDRDNPTIFRRFLLSEARRLRMRWIEENKSRVVVVGSRCNSNTNNNKGNYDFDLREVFNDVAVMNLIKDSTLGLEIRVFKELWDMVCNNSDRVCYGPKHVESAHEMKAIETLLISDDLYRNEEIDMRKKYVGLVKSVKEGGGKALVYSSMHVSTPQLDQLTGVAAILRFPLPGLQDIDDDDHV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03118 387 SUPERFAMILY L30e-like 279 379 IPR029064 -
Vifa5g03118 387 PANTHER PELOTA 1 384 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vifa5g03118 387 Pfam eRF1 domain 1 1 126 IPR005140 -
Vifa5g03118 387 Pfam eRF1 domain 3 279 375 IPR005142 -
Vifa5g03118 387 SUPERFAMILY Translational machinery components 135 273 - -
Vifa5g03118 387 FunFam Protein pelota homolog 276 387 - -
Vifa5g03118 387 SMART eRF1_1_2 1 128 IPR005140 -
Vifa5g03118 387 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 127 IPR038069 -
Vifa5g03118 387 Gene3D eRF1 domain 2 137 271 IPR042226 -
Vifa5g03118 387 Gene3D - 273 387 IPR029064 -
Vifa5g03118 387 FunFam Protein pelota homolog 1 129 - -
Vifa5g03118 387 NCBIfam mRNA surveillance protein pelota 2 375 IPR004405 GO:0070481|GO:0070966|GO:0071025
Vifa5g03118 387 Gene3D Pelota, domain A 1 129 IPR038069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03118 Vifa-Chr5 1034894242 1034895405 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03118 K06965 - gmx:100803618 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03118 5 1034894242 1034895405 Vifa5g03118 5 1034894242 1034895405 ECH