Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03116 ATGTTTAGATTCTGGGGATCACCAGATCAACCATCGCAGCAGGGTTCATCACAGTCGTGGTATCCACCATCTGTGACGAGCTCGTCGAGTTCTTCGAGACCTGCTACACCCGCTTCCTCTTCGGGTTCGCCGAGGCCTTCTTCGCATGTTCCGCCAGCTGAAGCCGCCGGAACAATTGCTTCTTTGAAGGACAAGAGTGTTGATGAGTTGAGAAAGCTTTTATCTGATAAAGATGCGTATCAACAGTTTCTACAATCACTTGAGCAGGTCAAGATTCAATCCAATCTTAAAGATGAACTTAGCAAGGAGAATTTGCAACTTGCAGAGGAAAATCTACAAAAGGAACCTCGTATCATGGAACTTAGGAATCAGTGTAGAATAATTCGCACAACTGAGTTAGCTACTGCCACTGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGAAATGTTAAAGTTGAATTCTCCTGCATCCCTTATCCAAAGGATTCAAGAGTCTGTGAACCAGACAGACGAGGAATCTGAAAACCTGCACCAGCAACTCCTTGACAAAGAGATTGACCTTGCAGCTTTCTTGCTGAAATACAAGAAGCTACGCACCACTTTTCACAAGAGAACTCTTATACATCTTGCTGCTAAAACATCAAATATATGA 654 0.4327 MFRFWGSPDQPSQQGSSQSWYPPSVTSSSSSSRPATPASSSGSPRPSSHVPPAEAAGTIASLKDKSVDELRKLLSDKDAYQQFLQSLEQVKIQSNLKDELSKENLQLAEENLQKEPRIMELRNQCRIIRTTELATATEKLNELEKQKEEMLKLNSPASLIQRIQESVNQTDEESENLHQQLLDKEIDLAAFLLKYKKLRTTFHKRTLIHLAAKTSNI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03116 217 Coils Coil 93 113 - -
Vifa5g03116 217 Coils Coil 133 153 - -
Vifa5g03116 217 Coils Coil 160 180 - -
Vifa5g03116 217 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 11 215 - -
Vifa5g03116 217 Gene3D Helix hairpin bin 141 210 IPR029012 -
Vifa5g03116 217 Pfam Modifier of rudimentary (Mod(r)) protein 63 207 IPR009851 -
Vifa5g03116 217 SUPERFAMILY Endosomal sorting complex assembly domain 155 205 IPR037202 -
Vifa5g03116 217 MobiDBLite consensus disorder prediction 1 60 - -
Vifa5g03116 217 MobiDBLite consensus disorder prediction 7 47 - -
Vifa5g03116 217 ProSiteProfiles VPS37 C-terminal domain profile. 137 217 IPR009851 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03116 K12185 - gmx:100305851 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03116 5 1034195177 1034199667 Vifa5g03116 5 1034195177 1034199667 ECH