Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03080 ATGGCGGTAACTTCAACATCACTCGCTTCTCAACTCTCCATTGGCCTCCGCCGCCAACCTTCCCCCAAGTTCGATTCCCTTACTTCCCAATCTCTCTCTTTCTTCGATCCCAATATTCGCCTTTCCGTTTCTTCCCCCAAACCCTCCCGTTCCGTTATCGCCATGGCTGGTTCCGGAAAGTTCTTTGTTGGTGGCAATTGGAAGTGTAATGGAACCAAAGACTCCATCAGTAAGCTTATCGCTGACTTGAACAATGCAAAATTGGAGCCTGATGTTGATGTTGTTGTTGCACCTCCCTTTGTATACATCGATCAGGTGAAAACCTCACTTACAGATAGGATTGAAGTATCTGGCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACCGGAGAAATCAGTGTGGAACAACTGAAAGACCTTGGATGCAAGTGGGTTATTCTTGGACATTCTGAGCGAAGGCATGTTATTGGAGAAAAGGATGAGTTTATAGGAAAGAAAGCTGCTTATGCTTTGAGCGAGGGTCTTGGAGTGATTGCATGCATCGGGGAATTGTTGGAAGAAAGAGAAGCTGGGAAAACTTTTGATGTCTGTTTCCAACAATTGAAGGCTTATGCAGATGCGGTGCCCAGTTGGGATAATATTGTTATTGCATATGAACCTGTATGGGCCATTGGAACTGGCAAAGTGGCCTCTCCCGAGCAAGCTCAAGAAGTGCATATAGCTCTTCGTGATTGGCTTAAAAATAATGTCTCAGCTGAAGTTGCATCTAAAACACGAATTATTTATGGAGGATCTGTAAATGGAGGGAACAGTGCTGAGCTTGCAAAGAAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGGGTCCGGAGTTTGCCACCATTGTCAATTCAGTGACATCCAAGAAAGTCGCGGCTTGA 933 0.4491 MAVTSTSLASQLSIGLRRQPSPKFDSLTSQSLSFFDPNIRLSVSSPKPSRSVIAMAGSGKFFVGGNWKCNGTKDSISKLIADLNNAKLEPDVDVVVAPPFVYIDQVKTSLTDRIEVSGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHIALRDWLKNNVSAEVASKTRIIYGGSVNGGNSAELAKKEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03080 310 CDD TIM 61 301 IPR000652 GO:0004807
Vifa5g03080 310 ProSitePatterns Triosephosphate isomerase active site. 218 228 IPR020861 GO:0004807
Vifa5g03080 310 Hamap Triosephosphate isomerase [tpiA]. 59 302 IPR022896 GO:0004807|GO:0006096
Vifa5g03080 310 FunFam Triosephosphate isomerase 55 304 - -
Vifa5g03080 310 Gene3D Aldolase class I 43 309 IPR013785 -
Vifa5g03080 310 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 60 302 IPR000652 GO:0004807
Vifa5g03080 310 NCBIfam triose-phosphate isomerase 62 292 IPR000652 GO:0004807
Vifa5g03080 310 SUPERFAMILY Triosephosphate isomerase (TIM) 58 303 IPR035990 GO:0004807
Vifa5g03080 310 PANTHER TRIOSEPHOSPHATE ISOMERASE 56 302 IPR000652 GO:0004807
Vifa5g03080 310 Pfam Triosephosphate isomerase 62 302 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03080 Vifa-Chr5 1017898161 1017901358 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03080 K01803 - gmx:100799358 543.117