Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03060 ATGGCTCTCTTTCTTTTTGTTATTTTAGTCTTAATGCCATCTTTAACCAATGCTTATTGGCCACCTTCACCTGGTTACTGGCCAAGTTCAAAGTTCCAGTCTATGAGTTTTTACAAAGGTTTTACAAATCTTTGGGGACCTCAGCATCAAAGACTAGAACAAAATGGATTAACAATTTGGCTTGATAGAACCTCGGGAAGTGGATTCAAATCGGTTCGTCCGTTCCGATCCGGGTATTTCGGTGCTTCCATTAAGCTTCAACCAGGTTATACTGCTGGAGTTATAACAGCTTTCTATTTATCAAACAGTGAAGCACATCCTGGTTACCATGATGAAGTGGACATTGAGTTTCTAGGGACAACATTTGGAAAGCCTTATACTTTGCAGACAAATGTTTATATAAGAGGGAGTGGAGATGGCAAAATTATAGGTAGAGAAGTCAAGTTTCATCTTTGGTTTGATCCTACCAAAGGTTTTCATCACTATGCTATACTTTGGAGTCCTAAGGAGATAATATTCCTAGTGGATGATGTGCCAATAAGGAGGTACCCTCGGAAGAGTGACACAACATTTCCAATAAGACCAATGTGGTTATATGGTTCAATTTGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAAGTATCAACCATTTGTGGCACACTACACAAATTTCAAAGCTAGTGGTTGCACAGCTTATGCACCCCGTTGGTGTAGACCGGTTTCGGCTTCGCCGTATGGCTCTGGTGGATTGAACTCACAGCAAAATAATGCAATGAGATGGGTGCAAAGGTATCATATGGTTTATAATTATTGTCAAGACTCAAAAAGAGATCATAGATTAACGCCTGAATGTTGGGGTTGA 882 0.4002 MALFLFVILVLMPSLTNAYWPPSPGYWPSSKFQSMSFYKGFTNLWGPQHQRLEQNGLTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNSEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREVKFHLWFDPTKGFHHYAILWSPKEIIFLVDDVPIRRYPRKSDTTFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVAHYTNFKASGCTAYAPRWCRPVSASPYGSGGLNSQQNNAMRWVQRYHMVYNYCQDSKRDHRLTPECWG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03060 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 34 291 IPR044791 GO:0004553
Vifa5g03060 293 PIRSF EndGlu_transf 1 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vifa5g03060 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 228 IPR000757 GO:0004553|GO:0005975
Vifa5g03060 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vifa5g03060 293 FunFam Xyloglucan endotransglucosylase/hydrolase 24 292 - -
Vifa5g03060 293 Pfam Glycosyl hydrolases family 16 39 220 IPR000757 GO:0004553|GO:0005975
Vifa5g03060 293 Gene3D - 17 291 - -
Vifa5g03060 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 279 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03060 Vifa-Chr5 1012887162 1012888787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03060 1 291 Glycoside Hydrolase AT3G44990 63.918 9.30e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03060 K08235 - gmx:100796698 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03060 5 1012887162 1012888787 Vifa5g03060 5 1012887162 1012888787 ECH