Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03020 ATGTTTTTTCCGTCCACACCATTTCCTTCTAGAATTCTTCCTTCTTCTTCAGTTATGATGCTTCATGAGCAAGCTACTCTTGCAGTTTCTTCTTTACCTTCTAGTTTTACTGCTCATTGTTTTCCTACCTCAGTTCTTCTGCAAGAGCATGGTGAAGAATATAGGCCAATACTTCATATGCATAAAGAAGACAAGACACCCCAGGTTCAGGCAGCCTTAAATACAAGGGCAATGGATGTGATGTTAGTTCCAGAGAAAAACAATGTTGGCGATGTTGATGAGTCGGCAGATAACTCTATGCGGCAATTGCATCTTCGGTGTCATTTACAGAACTTATTGGCTTCTTCGACGGAAGAGGATTTTGTTTTTTCTTCTTCTTCTTCTTCTTCTTCAACTATGCAGCCTGCTGATGATTTCCAATGGAATGCACTTTCTCTTGCCAAGCAAGCCCTATCAGCCTCAAAACAGGCCGCTGTAGTGGCTGAAGAGTTGAAATTGATTAAAATTGACGATGGTAATGATTCATCACCTCTCGGTTTGGCCGACTCTTCAATTGGAAAGAATAAAATCGTGAAGTCAACACGGCTTAAAGAAAGGCAATCTATACAGAGAAAAGTCTCAAACTCAAAAATTCTGGACGAAGAAAGGTTCCTTACAAAAAAATCTGATGCACAGAGAAGGTTACAAGTAGAGAAAAAGTTAAAAGGGCTTGGAGGAAATGATGCTTTGCGCTTGTTCTTATGGAGTCCTGAAACAAAGCAACGTTTGAACCTTGAAGAAGAGTCTCAATTGATTGCTCAGATACAGGATTTATTTAAATTGAAAGAAACAAAGATCAAGCTTCAGTCTCAGTTTGGGAGAGAACCAACTTTGCACGAATGGGCAGATTGTGTAGGCCTAAGCTGCCGTGTCCTTCAGGCACGGCTTCGATCTGGTAATAAAAGCAAAGATAAGCTGATTCATGCCAACTTACGCCTGGTAGTTCACGTTGCTAAATATTATCTGAAGCGTGGTCTCAACTTTCAGGACTTATTGCAGGAGGGAAGTATGGGCCTTATGAGGAGTGTCGAAAAGTTCAAACCCCGACCTGGTTGCCGGTTCAGTACTTATGCTTACTGGTGGATAAGGCAAACAATAAGGACGGCCATATATCTGCATTCCAAAACAGTTCGTCTTCCGGAGACTTTTTACGTCCTTTTGGGTAAAGTCGCGAAAGCAAAGAAATCGTACATTAAAGAAGGAAACCTTAACCCTACCAAAGAAGAAATAGCAAGCCGAGTAGAAATCACAGTAGATAAGTTGGAAATGTTGCTATTTTCTACAAGAACTCCGCTTTCGATGGAGCGAGCTGTTTGGTCCGACCAGAACACAACTTTCCAGGAGATTACTGCAGACTCTTCAATTGAGATCCCAAGTGTAAGTGTTGCAAAACAACTAATGAGGAGCCATTTACGTAGCATCCTAAACACATTAAGCCCAAAGGAAAGAAAGGTAATCAGATTGAGATTTGGTATTGAAGATGGCTATGAGAAATCTCTGTCAGAAATTGGCAAGGTGTTGGGTGTGTCTAAGGAAACGGTCAGACAGATAGAGAGCAAAGGATTGGACAAGTTCAAGCACTGCCTTGTTGATCAACAGCTTGATATGTAG 1650 0.4133 MFFPSTPFPSRILPSSSVMMLHEQATLAVSSLPSSFTAHCFPTSVLLQEHGEEYRPILHMHKEDKTPQVQAALNTRAMDVMLVPEKNNVGDVDESADNSMRQLHLRCHLQNLLASSTEEDFVFSSSSSSSSTMQPADDFQWNALSLAKQALSASKQAAVVAEELKLIKIDDGNDSSPLGLADSSIGKNKIVKSTRLKERQSIQRKVSNSKILDEERFLTKKSDAQRRLQVEKKLKGLGGNDALRLFLWSPETKQRLNLEEESQLIAQIQDLFKLKETKIKLQSQFGREPTLHEWADCVGLSCRVLQARLRSGNKSKDKLIHANLRLVVHVAKYYLKRGLNFQDLLQEGSMGLMRSVEKFKPRPGCRFSTYAYWWIRQTIRTAIYLHSKTVRLPETFYVLLGKVAKAKKSYIKEGNLNPTKEEIASRVEITVDKLEMLLFSTRTPLSMERAVWSDQNTTFQEITADSSIEIPSVSVAKQLMRSHLRSILNTLSPKERKVIRLRFGIEDGYEKSLSEIGKVLGVSKETVRQIESKGLDKFKHCLVDQQLDM 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03020 549 Pfam Sigma-70 region 2 319 383 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 393 465 IPR013324 -
Vifa5g03020 549 Gene3D - 474 549 IPR036388 -
Vifa5g03020 549 Gene3D - 392 469 IPR036388 -
Vifa5g03020 549 NCBIfam sigma-70 family RNA polymerase sigma factor 317 542 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 239 388 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 CDD Sigma70_r4 481 539 - -
Vifa5g03020 549 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 133 546 - -
Vifa5g03020 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 452 547 IPR013324 -
Vifa5g03020 549 PRINTS Major sigma-70 factor signature 527 538 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 PRINTS Major sigma-70 factor signature 343 356 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 PRINTS Major sigma-70 factor signature 512 527 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 PRINTS Major sigma-70 factor signature 491 503 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 PRINTS Major sigma-70 factor signature 367 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 Pfam Sigma-70, region 4 488 540 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 ProSitePatterns Sigma-70 factors family signature 1. 343 356 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 Pfam Sigma-70 region 3 400 471 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vifa5g03020 549 Gene3D RNA Polymerase Primary Sigma Factor 119 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03020 Vifa-Chr5 994285422 994300038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03020 - - aip:107648612 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03020 5 994285422 994300038 Vifa5g03020 5 994285422 994300038 ECH