Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02973 ATGATGATGAATTCATCGAACGGTAATATGAACCCGTCTTCTTCTTCATCGGCTCCTACACAGTCTCAAGGTCTCAAAACCTATTTCAAAACCCCTGAAGGAAGATATAAACTTCAATTCGAGAAATCTCACCCTGCTGGCCTTCTTCAATTCAATCATGGCAAAACCGTTTCTCTGGTAACATTGGCACATCTTAAGGAGAAGCCAGCGCCTTCAACTCCGACTGCCTCATCTTCGAGTTTCAGTGCTAGCAGTGGGGTACGGTCAGCCGCAGCTAGACTGTTAGGAGGAAGTAATGGAAGCCGGGCGCTTAGTTTTGTTGGTGGAAATGGTAGTAGCAAAAGCAATGGAGTGGCTAGTAGGATTGGTTCGATTGGTACCTCGAGTTCAAGTAGTTCTGTGGCTAATCCAAATTTTGATGGGAAAGGGTCTTACTTGGTCTTCAATGCCGGGGATGCTATTTTGATAAGTGATTTGAATTCTCAAGATAAGGATCCCATAAAGTCTATCCACTTCAGTAATTCAAATCCTGTGTGCCACGCATTTGATCAGGATGCTAAGGATGGGCATGATTTGCTTATAGGCCTGTTCTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAGTTACAGGATGTTGGTAAGAAGATTGTTGGGGCCCACCATTACAACAAAGATGGTATTCTCAATAACAGTCGTTGTACGTGTATTTCTTGGGTGCCCGGAGGTGATGGTGCTTTTGTTGTTGCTCATGCTGATGGGAACTTGTACGTATATGAAAAGAATAAAGATGGTGCCGGCGATACTTCGTTCCCAATCCTCAAAGATCCAACACAGTTTTCTGTTTCTCATGCTCGGTACAGTAAGAGTAATCCAGTCGCGAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAGCGGATGGGGCATACTTGGCAACTGTTGGACGAGATGGTTACTTGCGAGTGTTTGATTATGCAAAAGAACACCTTATATGCGGCGGGAAAAGTTATTATGGTGGTTTATTATGTTGTGCTTGGAGCATGGATGGAAAGTATATTTTGACGGGAGGAGAAGACGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAAGTTGTTGCATGGGGTGAGGGACATAGCTCATGGGTCAGTGGAGTGGCGTTTGATTCATATTGGACATCACCAAATTCAAATGACAACGGAGAAACAATTATGTATCGATTTGGTTCAGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGCCCTTGAGACGCCCCCCTGGTGGATCCCCAACTTTTGGATCCCCGACTTTTAGTGCTGGAAGTCAGTCATCCCATTGGGACAATGCAGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGAGATGTTCCAAAAATATCTCCGCTAGTTACTCACCGGGTGCATACCGAGCCACTTTCTAGCTTGGTATTTACCCAGGAATCTGTACTTACAGCCTGCCGGGAGGGACACATCAAAATCTGGACAAGACCTGGCATAGCCGAGAGCCAGCCAAGCAACTCCGAAACTTTGTTAGCTACCAGTCTCAAGGAGAAGCCTTTACTTTCTAGCAAGATCAGCAGTTCTAGCTACAAACAATAA 1662 0.4513 MMMNSSNGNMNPSSSSSAPTQSQGLKTYFKTPEGRYKLQFEKSHPAGLLQFNHGKTVSLVTLAHLKEKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKSNGVASRIGSIGTSSSSSSVANPNFDGKGSYLVFNAGDAILISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLFSGDVYSVSLRQQLQDVGKKIVGAHHYNKDGILNNSRCTCISWVPGGDGAFVVAHADGNLYVYEKNKDGAGDTSFPILKDPTQFSVSHARYSKSNPVARWHICQGSINSISFSADGAYLATVGRDGYLRVFDYAKEHLICGGKSYYGGLLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHSSWVSGVAFDSYWTSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTFGSPTFSAGSQSSHWDNAVPLGTLQPAPSMRDVPKISPLVTHRVHTEPLSSLVFTQESVLTACREGHIKIWTRPGIAESQPSNSETLLATSLKEKPLLSSKISSSSYKQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02973 553 PANTHER WD REPEAT PROTEIN 11 530 - -
Vifa5g02973 553 SUPERFAMILY WD40 repeat-like 133 517 IPR036322 GO:0005515
Vifa5g02973 553 SMART WD40_4 479 516 IPR001680 GO:0005515
Vifa5g02973 553 SMART WD40_4 222 260 IPR001680 GO:0005515
Vifa5g02973 553 SMART WD40_4 331 370 IPR001680 GO:0005515
Vifa5g02973 553 SMART WD40_4 373 425 IPR001680 GO:0005515
Vifa5g02973 553 SMART WD40_4 289 328 IPR001680 GO:0005515
Vifa5g02973 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 379 IPR001680 GO:0005515
Vifa5g02973 553 Pfam WD domain, G-beta repeat 300 328 IPR001680 GO:0005515
Vifa5g02973 553 Pfam WD domain, G-beta repeat 345 370 IPR001680 GO:0005515
Vifa5g02973 553 Gene3D - 14 523 IPR015943 GO:0005515
Vifa5g02973 553 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02973 Vifa-Chr5 979698683 979709309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02973 305 432 Miscellaneous Gene Families AT5G08390 23.438 8.03e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02973 K24741 - gmx:100782580 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02973 5 979698683 979709309 Vifa5g02973 5 979698683 979709309 ECH