Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02948 ATGGGTTCACTAGAAAGGTCAAAGAAAAAAACTCATTTATGGAAAAAAGCCATGCTTCATTTTTCTCTATGTTTTGTCATGGGTTTTTTCACAGGCTTAGCACCAACAGCACCTCAACCTTCTCAAGCTTCAACGAAAAATAGTAACAAAAGTTGGATAGATTCAACACCAAAAATTCATATCCCAAAAACAACATTGCATGCAAAATCATTACCTCAGTTAAAGTTAAAGCCGAAAAGACTTGTTATCATAGTAACTCCAACCAGCACAAAACTACCTTATCAAAATGTTTTTTTGAGAAGGTTAGCAAATACTATAAAGCTTGTTGATCAACCGGTGCTTTGGATTGTCCTCGAGGCGAAAACCGATTCGCCCGAGTTATCGGAGATTTTAAGGAAAACCGGTATTATGTATAGACATGTTGTTTTCAGTGAAGAGTTTGAGGATTTAGAAGCTGAGTTGAATCATCAGAGAAACTTAGCACTTAGTCACATTGAACATCATAGATTGAGTGGGATTGTTCATTTTGCGGGACTTTCAAATGTTTATGATCTTCAATTCTTTCAACAACTTAGAGATATTGAGGTGTTTGGGACATGGCCAACAGCATTATTACTTGCAAACAGAAAAAGAGTAATCCTTGAAGGACCAGTATGTGACTCATCTCAAGTTATTGGATGGCATTTAAGAAATATGAACAATGAAACATTAACTCCTCCCATTCATATTTCAAGTTTTGCATTCAATAGCTCCATTCTTTGGGACCCTGAAAGATGGGGTAGAACTTCTTCTAATAAACACACTTCTCAGAATTCAATCAAGTTTGTGAAGCAAGTAGTTCTAGAAGATGAAGCTAAGTTGAAGGGAATTCCACCATATTGCTCCAAAATATTGTTATGGCGTTTCAACTTCTATGCTCGTGCAATTTCCAAGCACTAA 939 0.3621 MGSLERSKKKTHLWKKAMLHFSLCFVMGFFTGLAPTAPQPSQASTKNSNKSWIDSTPKIHIPKTTLHAKSLPQLKLKPKRLVIIVTPTSTKLPYQNVFLRRLANTIKLVDQPVLWIVLEAKTDSPELSEILRKTGIMYRHVVFSEEFEDLEAELNHQRNLALSHIEHHRLSGIVHFAGLSNVYDLQFFQQLRDIEVFGTWPTALLLANRKRVILEGPVCDSSQVIGWHLRNMNNETLTPPIHISSFAFNSSILWDPERWGRTSSNKHTSQNSIKFVKQVVLEDEAKLKGIPPYCSKILLWRFNFYARAISKH 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02948 312 SUPERFAMILY Nucleotide-diphospho-sugar transferases 80 306 IPR029044 -
Vifa5g02948 312 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 12 302 IPR005027 GO:0015018|GO:0016020
Vifa5g02948 312 CDD GlcAT-I 80 304 IPR005027 GO:0015018|GO:0016020
Vifa5g02948 312 FunFam Glycosyltransferases 80 312 - -
Vifa5g02948 312 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 79 312 IPR029044 -
Vifa5g02948 312 Pfam Glycosyltransferase family 43 102 303 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02948 Vifa-Chr5 972546131 972548401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02948 1 307 Glycosyltransferase AT2G37090 59.538 1.70e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02948 K20869 - gmx:100785607 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02948 5 972546131 972548401 Vifa5g02948 5 972546131 972548401 ECH