Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02910 ATGAGAGATTTTGTAATCCTCGGTTCTTCCATCATCACTCCTCCTCCCAACTCCCAACCACCCTCCTCCTCCTCCTCCTCTTCCACTCCACAGCACCGCCACCCAATCATCAAACCCCACAAACCACCCCCTCTTTCAAAGCTCAATCCTTTATCTCCACGTAACAACTCTTCCACCCTTCTTCAAACCCCTCTCAAACCCAAACAATTCGACACCTGTGACATTGATTCCGAGGTCAATCCTGAGCTATTGGCCAATGCGGTTCTTGTAGGTATCAAAGGCAAGAATGTTCGGAGTGTGATTGAGAGTTTGAACAAAGTGGAGAGTATTGCCAAGATTTCTTTATCTACTCATCTTGATGCCCCTGTCATTGCAAATGAGTGTCGTCAATTGGTTACAAGTGGCCACATTGAAGAAGCTGTTGAGTTGATGGAGGTCCTCTCACGTTTCCAGTTATCAATTGCAGAACTTGTTCAGCCATCTGACATTCTAAAAAGATGTGTTCTTAAACGTAAACCAATTTTAGCTGTGAGATATGCGTCGCTTCTTCCACAAGCACTTATATTATTTTGCCAAATCATATCAGAATTTGGCAAAAGTAGGGATTTGGTTTCTGCTCTGAAAGCTTACGATGTAATGAAGAAGAACTTGAAAAGGCCCAATATGTATATATACCGCGCAATAATTGATGCTTGTGGTCTTTGTGGTGATTTCATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAAACCACTCCGAATGTATATGTGTTCAACAGTCTCATGAATGTGAATGCCCACGATTTCAGCTACTCGTTAAATTTATATCAGAATATGCAGAAGCTAGGCGTGAAACCCGATGTGACATCCTATAACATCCTACTAAAAGTATGCTGTGTAGCTGGAAGAGTTGACCTTGCCCAAGACATGTATAAAGAACTTAAGCATTTGGAATCTGTAGGACAACTGAAATTAGATGTTTTTACCTACAGCACAATTCTAAAGGTCTTTGCAGATAGAAAGTTGTGGCAAATGGCTCTAAAAATTAAGCATGACATGCTTTCTGCTGGTGTTTCTCTTAATACTGTTGCGTGGTCATCATTAATCAATGCATTTGCACACGCAGGGCATGTGGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGTCTGGCTGTGAACCCAATACACAGTGTTTCAACATCATTTTAAATGCATGTGTTGAAGGTTGTCAGTATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAATAAGATGTTAGTGTCCTTTGATGAAAGCAACAATAACAATTCAGAGCAGGGAGGCATGCATAATGTTACCACAGTACCAACAGGCGTTTCTAGTTCACATATCTTGAGTTTTACTGAGAGGTTCCCTTTCGCACCTACTACATCGACATACAATATTTTACTGAAGGCTTGTGGTTCTAATTACTATCATGCGAAAGCACTAATCAACGAGATGAGAACAGTGGGTCTTTCCCCTAATCAAATAAGCTGGTCAATTTTGATAGATATATGTGGAGCATCAGAAAACGTGGATGGTGTTGTTGAGATTTTGAGGACCATGATTGATTCTGGAATTAAACCCGATGTTATTGCATATACAACCGCCATTAAGGTTTGTGTTGAAAGTAGGAATTTTACGCAAGCACTAACCCTATATGAAGAAATGCAAAGCTACGGGACACTTCCAAATTTGGTGACATATAATACACTTCTAAGGGCACGTGGGAAATATGGATCCTTACGTGAAGTGCAACAGTGTCTGGCTATATATCAGGATATGCGGAGGGCAGGGTTCAAACCCAATGACTACTATTTGGAGGAGCTGATTGAGGAGTGGTGTGAAGGAGTAATACAAGACAGCGGAGAGTATGAATGTGAATATTCTTACAACAAGAAACCTGAAATAGAGAGACCTCAGAGTTTACTTCTTGAAAAAATTGCAACACATCTACTAAAGAGAGTAGCTGACATCTTGGCAATTGATGTTCAAGGGCTCACTAAGGTTGAAGCCCGCCTCGTCATTCTCGCAGTTCTTCGAATGATCAAAGAGAACTATGCTTTTGGGCATTCGGTGAATGATGACATCTTGATCATCATAGGAGCTACCAAAGCAGATGAGAGTCCATCCAAAGAGATATTAGAAGTGCAAGAGGCTATTATCAAACTTCTTTGGAATGAATTGGGGCTTGAGGCTCTCCCGGCAAAAACCAGTTTTGCACCAAATGACAGAACAAAGTTACAGAACCCCAAACTTTTAAATCTCAGCCTAAAAGCACTGCCAGCAGATAATGCATTAGCCTCCACATCGGGGGTTCACACAAGGAGACCAGCAGTTCTACAAAGACTGAAGGTCACCAAAAAATCGTTACACCGTTGGTTACAAAGGAAAGTTAGCGTAAAATAG 2445 0.4102 MRDFVILGSSIITPPPNSQPPSSSSSSSTPQHRHPIIKPHKPPPLSKLNPLSPRNNSSTLLQTPLKPKQFDTCDIDSEVNPELLANAVLVGIKGKNVRSVIESLNKVESIAKISLSTHLDAPVIANECRQLVTSGHIEEAVELMEVLSRFQLSIAELVQPSDILKRCVLKRKPILAVRYASLLPQALILFCQIISEFGKSRDLVSALKAYDVMKKNLKRPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKTTPNVYVFNSLMNVNAHDFSYSLNLYQNMQKLGVKPDVTSYNILLKVCCVAGRVDLAQDMYKELKHLESVGQLKLDVFTYSTILKVFADRKLWQMALKIKHDMLSAGVSLNTVAWSSLINAFAHAGHVEQAIQLFEEMLLSGCEPNTQCFNIILNACVEGCQYDRAFRFFHSWKGNKMLVSFDESNNNNSEQGGMHNVTTVPTGVSSSHILSFTERFPFAPTTSTYNILLKACGSNYYHAKALINEMRTVGLSPNQISWSILIDICGASENVDGVVEILRTMIDSGIKPDVIAYTTAIKVCVESRNFTQALTLYEEMQSYGTLPNLVTYNTLLRARGKYGSLREVQQCLAIYQDMRRAGFKPNDYYLEELIEEWCEGVIQDSGEYECEYSYNKKPEIERPQSLLLEKIATHLLKRVADILAIDVQGLTKVEARLVILAVLRMIKENYAFGHSVNDDILIIIGATKADESPSKEILEVQEAIIKLLWNELGLEALPAKTSFAPNDRTKLQNPKLLNLSLKALPADNALASTSGVHTRRPAVLQRLKVTKKSLHRWLQRKVSVK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02910 814 Pfam PPR repeat family 255 301 IPR002885 -
Vifa5g02910 814 Pfam PPR repeat family 363 410 IPR002885 -
Vifa5g02910 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Vifa5g02910 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Vifa5g02910 814 Pfam Pentatricopeptide repeat domain 476 519 IPR002885 -
Vifa5g02910 814 Pfam Pentatricopeptide repeat domain 530 590 IPR002885 -
Vifa5g02910 814 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 132 316 - -
Vifa5g02910 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Vifa5g02910 814 Gene3D Tetratricopeptide repeat domain 189 319 IPR011990 GO:0005515
Vifa5g02910 814 Gene3D Tetratricopeptide repeat domain 320 462 IPR011990 GO:0005515
Vifa5g02910 814 Gene3D Tetratricopeptide repeat domain 463 653 IPR011990 GO:0005515
Vifa5g02910 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 614 IPR002885 -
Vifa5g02910 814 MobiDBLite consensus disorder prediction 1 63 - -
Vifa5g02910 814 Pfam PPR repeat 330 360 IPR002885 -
Vifa5g02910 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
Vifa5g02910 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Vifa5g02910 814 NCBIfam pentatricopeptide repeat 545 577 IPR002885 -
Vifa5g02910 814 NCBIfam pentatricopeptide repeat 509 543 IPR002885 -
Vifa5g02910 814 NCBIfam pentatricopeptide repeat 292 317 IPR002885 -
Vifa5g02910 814 NCBIfam pentatricopeptide repeat 365 399 IPR002885 -
Vifa5g02910 814 NCBIfam pentatricopeptide repeat 330 363 IPR002885 -
Vifa5g02910 814 NCBIfam pentatricopeptide repeat 579 615 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02910 Vifa-Chr5 960710605 960717349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02910 236 634 Glycosyltransferase AT1G05670 22.770 4.18e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02910 - - gmx:100794606 1139.41