Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02888 ATGCAGATAATTTGCTCCGGTAGTTGTATTAATTTTGAATTTAGCTTGAAGATATCGACAATGCCTCGCTACGATGATAAGTATGGCAATACTCGCCTCTATGTGGGTCGTCTGTCATCGCGAACTCGTTCTCGTGATCTGGAGAGAGTCTTCAGCCGATATGGAAGAGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAGTTTAGCGATCCTCGAGATGCGGATGATGCAAGGTACAACTTGGATGGGCGTGATGTTGATGGAAGTCGTCTTATTGTGGAATTTGCTAAAGGGGTTCCTCGGGGTTCTCGCGATTCTCGTGATTCTCGAGAATATCTTGGTAGAGGTCCACCTCCTGGATCTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTATCGCTGTGGGGAGAGAGGTCATATTGAGAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGCAGACATGCACGCAGTGTTTCTCGCTCTCCAGGAAGGTCACGTTCTCCTAGGCGTGGCAGAAGCCGTGATAGAAGCTACAGCCCAGCTCACAGCTATAGCCGATCAAGATCTCCTGTTAGATCTCGATCTCCTGCCAGAAGAGATCGAAGCCCAGTTCCTGATGAAAGATCCCGGAGCCCCCCACCTTCCAAGTCAAGGAAGTATACTAGATCTCCTGAAGGTAGTCCTCAAAGGAGTGCATCACCTGCTAATGATAAGGTGGTCACAGCCCAAGATGGGTCTGATTACAGTGATGGTCCTAGAGTGAAGAGCAGAAGCCCCTCGAGGGACAATGATGACAGCCCTAAGGCTAATGGCAGAAGCCGTAGCAGAAGCCGCAGCAGAACCCCTAGCCGCAGCCGCAGTCGCAGTCCCAGGGATGAGGATAGGAGCCCCATAGAGGATGATGATGACACCACTCGTCGCACTCCTTCACCTTGA 990 0.502 MQIICSGSCINFEFSLKISTMPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHARSVSRSPGRSRSPRRGRSRDRSYSPAHSYSRSRSPVRSRSPARRDRSPVPDERSRSPPPSKSRKYTRSPEGSPQRSASPANDKVVTAQDGSDYSDGPRVKSRSPSRDNDDSPKANGRSRSRSRSRTPSRSRSRSPRDEDRSPIEDDDDTTRRTPSP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02888 329 MobiDBLite consensus disorder prediction 167 189 - -
Vifa5g02888 329 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Vifa5g02888 329 ProSiteProfiles Zinc finger CCHC-type profile. 148 164 IPR001878 GO:0003676|GO:0008270
Vifa5g02888 329 MobiDBLite consensus disorder prediction 303 329 - -
Vifa5g02888 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 94 IPR000504 GO:0003723
Vifa5g02888 329 Gene3D - 147 190 - -
Vifa5g02888 329 MobiDBLite consensus disorder prediction 234 261 - -
Vifa5g02888 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 101 IPR000504 GO:0003723
Vifa5g02888 329 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
Vifa5g02888 329 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Vifa5g02888 329 SUPERFAMILY Retrovirus zinc finger-like domains 117 165 IPR036875 GO:0003676|GO:0008270
Vifa5g02888 329 Gene3D - 20 104 IPR012677 -
Vifa5g02888 329 MobiDBLite consensus disorder prediction 160 329 - -
Vifa5g02888 329 Pfam Zinc knuckle 147 164 IPR001878 GO:0003676|GO:0008270
Vifa5g02888 329 Pfam Zinc knuckle 126 141 IPR001878 GO:0003676|GO:0008270
Vifa5g02888 329 SMART rrm1_1 32 97 IPR000504 GO:0003723
Vifa5g02888 329 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 117 145 - -
Vifa5g02888 329 Gene3D - 105 146 - -
Vifa5g02888 329 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 31 210 - -
Vifa5g02888 329 FunFam Serine/arginine-rich splicing factor RS2Z32 23 106 - -
Vifa5g02888 329 MobiDBLite consensus disorder prediction 211 232 - -
Vifa5g02888 329 SUPERFAMILY RNA-binding domain, RBD 26 126 IPR035979 GO:0003676
Vifa5g02888 329 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02888 Vifa-Chr5 956312435 956315276 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02888 K12896 - gmx:100813237 372.859