Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02857 ATGAAAATAGAATCCAAAAAAACCAAGTCATGGTCGAAATTAGCTATTAGGAACTGGCTTAGTGCAAAGAATGATAGTTCTGAAAAAATTTCTTTAGACTACACTATTGAAGACTCTGCGACACAAACAAGAAAAAGTTGCTCAGAACAAGATAGTTACATCCTCGTACCAGATGATTTCTCTGGGTGGTTGAAGCATTCTCCAACTAACGTAAAACGTTCGGTCTTTGAAGAGAAAAAAGCTTGTGCCATCACCAATCCTCTAAACCTTAGGATGTTTGTTGGGACGTGGAATGTTGGGGGGAAGTCACCAAATGAAGATTTGGACTTAAGGAATTGGCTTACGTCTACTTCGCCAGCTCACATATATGTTATTGGGTTTCAAGAAATTGTACCTCTAAATACTGGGAATGTGCTGGGGTCAGAGGACAGTGGTCCAGCAATAAAATGGTTGGGCCTTATTCATGAAGCCCTAAACACAACCAACCATGAAAGCCCAAATGAGAAGCAATGTTTTAGCCTAATAGCAAGCAAGCAAATGGTTGGTATTTTCTTGTGTTTGTGGGTTCGCACCGATTTTTGCAATCATGTTAGTAATTTAAAAGTGTCTCGAGTTGGAACGGGCATCATGGGCTATTTCGGAAATAAGGGTTCAATATCAATTAGCATGAGATTGTATCAAACTACATTCTGCTTTGTTTGTACTCATTTGGCATCTGGAGAAAAATGTGGTGACGAGTTGCGAAGAAACTTGAACATCTCGGAAATCATCAAGAGGACTAAATTTTCTCACTCACTTGGCATACTAGAACATGATAACATTATTTGGTTGGGGGATTTGAATTATCGACTGGCCGCGGGTTACGACGACATACACGAGCTACTAAAGAAGAAGAATTTGAAGGCATTACTAGAGAAAGATCAGCTAAGAATGGAGCAGAAAGCTGGAAGAATATTTGAAGGTTGGAATGAAGGAACCATATATTTTGCTCCTACATACAAATACTTAACAAATTCAGATCAATACGTTGCACAAACATGTAAATCCAAGGAAAAACCACGCACTCCCGCTTGGTGTGATAGAATTCTGTGGAAAGGAGAAGGATTGAATCAGAAATTGTATGTTAGAGGAGAGTCAAAATTCTCTGATCATAGGCCAGTGTATTCATTATTCACAGCACAAGTGAACATGAACATGAACATGAACATGAACATGACAAACAAGAATCTTACTCGTTCTGCTTCTACTACTGTCTCAAGATCCTGTTCCTTAAAACCATTCCCAAATTCTGCTTCATTGTCTTCTACTTGTTGTTGTGTTGCTGCTAAAGTACAAGCTGAAGAGCAGATTATGTTACTTGCAACTAGGGCACAGAGTTGTATAGACTCTATTACAAGATTCTTGTAG 1407 0.3888 MKIESKKTKSWSKLAIRNWLSAKNDSSEKISLDYTIEDSATQTRKSCSEQDSYILVPDDFSGWLKHSPTNVKRSVFEEKKACAITNPLNLRMFVGTWNVGGKSPNEDLDLRNWLTSTSPAHIYVIGFQEIVPLNTGNVLGSEDSGPAIKWLGLIHEALNTTNHESPNEKQCFSLIASKQMVGIFLCLWVRTDFCNHVSNLKVSRVGTGIMGYFGNKGSISISMRLYQTTFCFVCTHLASGEKCGDELRRNLNISEIIKRTKFSHSLGILEHDNIIWLGDLNYRLAAGYDDIHELLKKKNLKALLEKDQLRMEQKAGRIFEGWNEGTIYFAPTYKYLTNSDQYVAQTCKSKEKPRTPAWCDRILWKGEGLNQKLYVRGESKFSDHRPVYSLFTAQVNMNMNMNMNMTNKNLTRSASTTVSRSCSLKPFPNSASLSSTCCCVAAKVQAEEQIMLLATRAQSCIDSITRFL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02857 468 Pfam Endonuclease/Exonuclease/phosphatase family 95 384 IPR005135 GO:0003824
Vifa5g02857 468 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 16 407 IPR045849 GO:0004445
Vifa5g02857 468 SMART i5p_5 88 399 IPR000300 GO:0016791|GO:0046856
Vifa5g02857 468 Gene3D Endonuclease/exonuclease/phosphatase 69 423 IPR036691 -
Vifa5g02857 468 SUPERFAMILY DNase I-like 83 395 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02857 Vifa-Chr5 946679005 946682419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02857 62 365 Acyl Lipid Metabolism Gene Families AT1G05630 31.519 4.16e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02857 - - psat:127130123 855.899