Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02841 ATGGTGGGTGTTATTTCGTTGATAACAGGGATGGCTGGTCCAAGTGGGTTTGGATCAGCTTCAACTGCGGAGAAGGTTACAGAAGGAATTGATGCTAACAACCTTACCGCAATTATCACAGGAGGAGCAAGTGGTATTGGGTTGGAGACAACAAGAGTGTTGGCTCTTAGAAATGTACATGTCATCATTGCTGCAAGAAGCATGGAATCTGCAGAGAAAGCCAAGCAACAAATAACACAAGAAAACAAGTTTGCACGAGTGGATATAATGAAACTTGACTTGTGTTCAACAAAATCTGTCAGATCATTTGTGGAGAATTTCATTGCTCTTGATCTTCCTCTCCACATCTTAATAAACAATGCTGGGATCATGTTTTGTCCCTTCAAGCTTTCAGAAGAAGGGATTGAGATGCAGTTTGCAACAAATCATCTAGGTCATTTTCTATTGACAAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAAACAACTGGAATAGAGGGAAGGATCATAAATCTATCATCAATTGCTCATAGATACACTTACTGCAGAAAGGGGATTAGATTTGATAAGATCAATGATCGAAATGGTTATTCTAATAAAAAGGCCTATGGACAGTCCAAGTTATCCAATATATTACATGCAAATGAACTATCTCGTCGTCTTCAGGAAGAGGGTGTGAACATTACAGCCAACTCTGTTCATCCAGGAGTAATAATGACTCCTCTTATGAGATATTCTTCTTATCTTATGAACTTCTTGAAGATCTTCAGCTTCTACATATGGAAGAACGTCCCACAGGGAGCAGCTACAACATGCTATGTTGCACTTCACCCAAACGTGAAAGGTGTGACTGGGAAATACTTTGTGGATTGCAATGAATTCAAGCCAAGTTCATTTGCTAGAAATAAACCGTTAGCAAAGAAGCTTTGGGATTTTAGTGACAAGTTGATCAACTCAATCTCAAAAGCTTGA 975 0.3877 MVGVISLITGMAGPSGFGSASTAEKVTEGIDANNLTAIITGGASGIGLETTRVLALRNVHVIIAARSMESAEKAKQQITQENKFARVDIMKLDLCSTKSVRSFVENFIALDLPLHILINNAGIMFCPFKLSEEGIEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSIAHRYTYCRKGIRFDKINDRNGYSNKKAYGQSKLSNILHANELSRRLQEEGVNITANSVHPGVIMTPLMRYSSYLMNFLKIFSFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNEFKPSSFARNKPLAKKLWDFSDKLINSISKA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02841 324 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Vifa5g02841 324 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Vifa5g02841 324 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Vifa5g02841 324 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Vifa5g02841 324 Gene3D - 26 321 - -
Vifa5g02841 324 Coils Coil 68 88 - -
Vifa5g02841 324 CDD retinol-DH_like_SDR_c_like 36 311 - -
Vifa5g02841 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Vifa5g02841 324 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Vifa5g02841 324 Pfam short chain dehydrogenase 36 181 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02841 Vifa-Chr5 941201180 941204991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02841 38 297 Acyl Lipid Metabolism Gene Families AT3G55310 26.165 6.43e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02841 K11153 - gmx:100801849 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02841 5 941201180 941204991 Vifa5g02841 5 941201180 941204991 ECH