Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02784 ATGACGGGAATTCCTCGGAATCGTGATCACACCTCTAATTCTAAACGGAGCAATGTCTTTAATTTGGTTGCACGGAGAGAGATTTCTCCAAGAACAAAGCATGCAGCAAGAGATGCAAGACGTGGCCTCCTGTCATGGGTTGAGGCCGATTCGTTGCGGCATTTGTCAGCCAAGTATTGCCCTTTATTACCTGCCCCAAGGTCTACCATTGCAGCAGCATTTAGTCCAGATGGAAAAGTTCTTGCATCCACGCATGGTGACCACACTGTAAAGATAATAGATTGTGAAACTGGACGTTGCTTAAAGGTGTTAATGGGCCATATGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCAGAGTGCATAACATCTCACCATTTCTATCGCCCAATTGCTTCCATTGCTTTTCATGCCAAAGGGGAAATTATTGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTATGACAAGAAAAGTGAAGCATCCTACTCACCAATTTTTGTGTTGAAGACTAGGCGATCTCTACGAGCCGTGCATTTTCACCCTCATGCTGCACCATATCTTTTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCGATGACAGAGGCAACATCTATTGGTTATTTACAATATCCTCCACCTGCCGTTTTTGTCACAAATATTCAACCCACGGAACATGTTACTTTGTCCAGTGAACCGCCTAACGTTTCATCGACTTTCTTCTTCGTTCCTTCATTTACTGTTGATGAGTCAAGAGACGAATTACAGCATGCTAGTCATGATGATGGCTCGAGTAGAATGCAAGTAGAGTCCCCTGCGGTGGTTCAGTTTCAAGTAGATACAAATGTAACAGAGCAATGTGATACTTCGTCTCCCATGGACACAGTCTCGGAGGTTCCAACTAACTCTCAACCTGGTACAGAATATCCCGCTCATTCTTCTTTCTCTAATGGAATGGGAATTGGCATCCGCAACCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCGTCGGAAGGAAGTCAACACGGAAACGTTACTGATATAAGTTCTCTCAATGGCATGTTACACGGACTATCGGGGCAAACTGCAAATCATGGGGTTCATTCAGAGTTGGGTCAATTTCATCAGTTTGTTTCTTCAAGAGACACAAGTGGCTGGGAGTTACCTTTTCTACAAGGATGGTTAATGGGTCAAAGCCAAGTTGCAATGCCATCTACAACAATGTCCGGCGGCATCAACATACCCAGATCTTCTACAAGATCAGGTCTACGGAGTAATTTTTCCCAATTGCTTAGACCTGTATCTGAATCCCGAAATCTTGCAGCTTCTACTAATACCCCACACAATGGATCTGACATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCAACATCTGTGGCTGCAGCGGCAGCTGCTGAATTGCCTTGTACCGTGAAGTTAAGGGTATGGTCTCATGACATAAAAAATCCCTGTTCCCCACTAAATTCTGACAGATGTCGTCTAATCATACCTCATGCTGTCCTCTGCAGTGAAATGGGTGCCCACTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGCATGCTTCCACATATAGAAGCTGATCCAGGATTGCAAACTCCAGTACATCAAGAGCCTGGTGTTGCAACATCACCAACTCGGCATCCGATATCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGATTGGTGCTTGCTTCTCGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCTCCTACATCGGAGCACATACTCCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACGTTACCTATATATACAGTTTTAGAGGTGTATAGGGTTTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCTGAAGATGAGGTTAATGTGGCATGCTTTCATCCTTTTCCCGGGGGCGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATTCTTCACTACGATGGTGCTCACCCAGTGAATGGCAATGGACCAAGTTACTTTCCCGAGGAGACCGTCGTTGGATTCAGTCAGTGA 2211 0.4505 MTGIPRNRDHTSNSKRSNVFNLVARREISPRTKHAARDARRGLLSWVEADSLRHLSAKYCPLLPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLMGHMRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKSEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSIGYLQYPPPAVFVTNIQPTEHVTLSSEPPNVSSTFFFVPSFTVDESRDELQHASHDDGSSRMQVESPAVVQFQVDTNVTEQCDTSSPMDTVSEVPTNSQPGTEYPAHSSFSNGMGIGIRNLTMDGMETDETRPSEGSQHGNVTDISSLNGMLHGLSGQTANHGVHSELGQFHQFVSSRDTSGWELPFLQGWLMGQSQVAMPSTTMSGGINIPRSSTRSGLRSNFSQLLRPVSESRNLAASTNTPHNGSDIQTIMSRIQSELATSVAAAAAAELPCTVKLRVWSHDIKNPCSPLNSDRCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPVNGNGPSYFPEETVVGFSQ 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02784 736 Gene3D - 40 227 IPR015943 GO:0005515
Vifa5g02784 736 Pfam WD domain, G-beta repeat 98 137 IPR001680 GO:0005515
Vifa5g02784 736 Pfam WD domain, G-beta repeat 71 94 IPR001680 GO:0005515
Vifa5g02784 736 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 14 731 - -
Vifa5g02784 736 MobiDBLite consensus disorder prediction 310 344 - -
Vifa5g02784 736 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 63 713 IPR011047 -
Vifa5g02784 736 SMART WD40_4 97 137 IPR001680 GO:0005515
Vifa5g02784 736 SMART WD40_4 56 94 IPR001680 GO:0005515
Vifa5g02784 736 SMART WD40_4 671 711 IPR001680 GO:0005515
Vifa5g02784 736 SMART WD40_4 140 177 IPR001680 GO:0005515
Vifa5g02784 736 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 142 - -
Vifa5g02784 736 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 146 IPR001680 GO:0005515
Vifa5g02784 736 FunFam Activating molecule in BECN1-regulated autophagy protein 51 232 - -
Vifa5g02784 736 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02784 Vifa-Chr5 922449585 922454229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02784 71 239 Miscellaneous Gene Families AT5G08390 24.176 1.51e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02784 K17985 - gmx:100817857 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02784 5 922449585 922454229 Vifa5g02784 5 922449585 922454229 ECH