Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02778 ATGGATGCAAAAGAAGAAGGAGAACCTAATGAGGATAGACCCACATCTCCAATGTGGGTTCTACAACAGATATCTGAAGGAGCCTTTAGAGTTGCTGGGGAAGCATTGCAAAATATGTACTCTGGTGGTGGATCGAATGTGCCGCAAGTAGGGCCTAGTGTTGCACATAGGAGAAGTCAGAGTGAAATTGTGTCTAAAGATTTTCAACGTAGTAATAGTTTTCAGAAGTTAAAAGCTCATGTGCATAAGGCATGGTGGGGTGGAAAACCGAGGGAAGAAGGTTTAGGCGCGAGTTTCAATCCTGAGGTTATGGCGAACCAGAAACGTCAGTGGTATCAGCTTCATCCCAAATCTATGGATTGTATGAATTATAAGGAGCCAACCTCGCTCTTTGAACATTTTGTGGTTGTGGGACTGCATCCAGATGCTAATTTGGAAGTCGCGGAGCACGCATTTGCAAGAAGGAAGAAATGGGAAAGAGAGACGGAAAGCGATGAAAATCTAGATTACAGAATACCGCTGCAACAAAGGCCGCCAGAACCAACTTTGGAACCTCAGATACTGTTCAAATATCCTTCTGCGAAGAGGATGACAGTGCGTTTGAAAGATTTAGCCTCCTTTTGCTTTCCTGGAGGTGTTAAGGCAGGGTTGTTGGAGAGGACTCCATCTCTAAGTGAGCTAAACGAACTAGTCTATGCACAGCAGCATTTGGGAAGAGATGATCTATCGTTTGTCTTTACACTCAAGGCAGCCGACAGTACAACACTTTATGGAGTTTGCTTACATGTGCCTGAAATTGTTCAGAGGCCCCCTGGTATTATAGGCACATCATCTCCTCCTTCTTTTCCCTCTGGGCTATGCAGCCGTTTTCTGGTTTCCGCACCTCGCTGTTACTGTCTTCTGACTAAAGTTCCTTTCTTTGAGTTACACTTTGAGATGTTAAACAGTCTTATTGCACAGGAGCGTCTGAACCGGATTACTCAGTTTGTAAATGAGATTACTCTCTCTGGTTGCATTCCGTCGACGCCCAAACTAGATGACCAATTGAGTTCATGCACTAACTCTCCAGAGAGGGAGTCATTTAGTGACTGGATGGCTTGTGCAATACCTCTTGATGGTGCAGCAGTCATTACTGCTGCTGCTGCTGGACTTATATCTGATGATGAAATCCCACAGTTATCACCCAAAATATGGGATTCTCGCTGTCAATCCCCTGTTAGTGTGACTGCCAGTGATGCCTCAGATATTTGTCAGTATAGGGATATAGATAAGGATGGCAAGAAGAATCTGCAAGATCACGATACATGTGCTTTTGAGGGGCCAGAACCTCATGATTCTGTGGAAAGAATGCATGGAAATTGTGAAGGTGACCAAGTTTCTCCCAGTGTTGGGACACCTATATCTGCTCATTGTTCCACCTTGGAACGTCTCGGAAGTTCTGAGTCACTTTTCAGTCCAGTTAGAAGCATTGTGTCCGAAGATGAGGATCCTCCTTTTTCAAACAATGAAATCGATAACGGAGATGAGTTGTTGATGGAATGGGCTATGGAGCATAAGAATGATTTACTACAGATAGTGTGCAGATATCATGCTCAAGCTATTCCACCTCGAGGAAGTGAATTTGTCTTCCACCCTCTTGAACATTTACAAGCTATTCAATATATACGACATTCAGTTGCGTCTCTTGGCTTCAAAGAAAATTGTTTAGATTGTTCTGAACCAACTGAGGTCAATGCAAAGTTGGCAGCTGCTGAGGAAGCCCTTTCATTATCAGTATGGACAACGTCAACTACTTGTCGAGTTCTATCTCTTGATAGCTTGCTGGCATTAGTTACAGGAGTGTTATTGGAAAAACAGGTTGTAATAGTGTGCCCAAATTTGGGTGTTCTATCTGCAGTAGTGCTTTCTCTTATACCCATGATTCGTCCATTTCAGTGGCAGAGTTTACTGCTTCCGGTTTTGCCAGGAAAAATGATTGATTTTCTTGACGCCCCAGTTCCATATATTGTTGGAATACAACATAAACCAGATGACTTGTATATTAAAACAAGTAATCTTGTTGAAGTTGATGTACTGGAAAATCAGGTTAAAATGTGTCATTTGCCTAGACTTCCACGGCAAAGAGATCTTGTTTCTCAGTTGACTCCAATTCATGCCAGACTTTCAAGTGAGAGTGCAATTGCTAAAAAGCATCCTATACATAGGTGCAACGAAGTCCAGGCCGAAATTGCAACTCAGTTTTTGAATATTGTGTGGCACTATTTGGAGTCACTTTGTTCGAATTTGAAATCGCATACGATAACTAGTGTACAATCAAATAGCGACAGGGTTTCTTTACTTCTTAAAGATACCTTCATTGACTCCTTTCCTCTTAGGGACCAACCATTCATTAAGCTTTTTGTAGATACACAGCTATTCACTGTTTTATCAGACTCTTATCTATCTAGCTTTGAGAGCGGAAAATCGTAG 2469 0.4237 MDAKEEGEPNEDRPTSPMWVLQQISEGAFRVAGEALQNMYSGGGSNVPQVGPSVAHRRSQSEIVSKDFQRSNSFQKLKAHVHKAWWGGKPREEGLGASFNPEVMANQKRQWYQLHPKSMDCMNYKEPTSLFEHFVVVGLHPDANLEVAEHAFARRKKWERETESDENLDYRIPLQQRPPEPTLEPQILFKYPSAKRMTVRLKDLASFCFPGGVKAGLLERTPSLSELNELVYAQQHLGRDDLSFVFTLKAADSTTLYGVCLHVPEIVQRPPGIIGTSSPPSFPSGLCSRFLVSAPRCYCLLTKVPFFELHFEMLNSLIAQERLNRITQFVNEITLSGCIPSTPKLDDQLSSCTNSPERESFSDWMACAIPLDGAAVITAAAAGLISDDEIPQLSPKIWDSRCQSPVSVTASDASDICQYRDIDKDGKKNLQDHDTCAFEGPEPHDSVERMHGNCEGDQVSPSVGTPISAHCSTLERLGSSESLFSPVRSIVSEDEDPPFSNNEIDNGDELLMEWAMEHKNDLLQIVCRYHAQAIPPRGSEFVFHPLEHLQAIQYIRHSVASLGFKENCLDCSEPTEVNAKLAAAEEALSLSVWTTSTTCRVLSLDSLLALVTGVLLEKQVVIVCPNLGVLSAVVLSLIPMIRPFQWQSLLLPVLPGKMIDFLDAPVPYIVGIQHKPDDLYIKTSNLVEVDVLENQVKMCHLPRLPRQRDLVSQLTPIHARLSSESAIAKKHPIHRCNEVQAEIATQFLNIVWHYLESLCSNLKSHTITSVQSNSDRVSLLLKDTFIDSFPLRDQPFIKLFVDTQLFTVLSDSYLSSFESGKS 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02778 822 SMART DENN_cls 293 694 IPR001194 -
Vifa5g02778 822 Pfam uDENN domain 185 263 IPR005113 -
Vifa5g02778 822 ProSiteProfiles Tripartite DENN domain profile. 169 822 IPR037516 -
Vifa5g02778 822 Pfam DENN (AEX-3) domain 596 691 IPR001194 -
Vifa5g02778 822 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 56 817 - -
Vifa5g02778 822 SMART uDENN_cls 127 264 IPR005113 -
Vifa5g02778 822 Gene3D - 591 756 IPR043153 -
Vifa5g02778 822 Gene3D - 118 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02778 Vifa-Chr5 920701260 920707740 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02778 - - gmx:100814487 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02778 5 920701260 920707740 Vifa5g02778 5 920701260 920707740 ECH