Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02774 ATGGAGGAGGACGGTGAGATATACGACGGTGCAAGAGCTGAATTCCCTATTTCCTTCGGAAAACAATCCAAATCTCAAACTCCTCTCGAAACCATTCACAACGCCACTCGTCGTTCCGTTCCCAATTCCAAAACCGCCAACGACTTTCCTTCCGTTTCTTCCTCTTCCAAACAATGGCTTCAATCCGTTCGTTCTTCCAAGAACCCTACCCCTCTTCCTCCTCCGCCACCATCTCCTCCTCTTCACGACGATTCTCCCCTCGTCGGACCTCCTCCGCCGCCACCACATAATGACGAGAAGGAGGAGGATGACGGTGACATGATTGGCCCGCCCCCGCCGCCACCTGGTTCCAATCTGGACGATTCCGATTCCGACGAGGATTCTGATCAAGACTTACTCGGAAACCGGTTTCGTATTCCGCTTAGCAACGAGATTGTACTCAAAGGCCATACAAAGGTTGTATCAGCTCTTGCTGTGGATCACTCTGGATCCAGAGTACTGTCTGGAAGCTATGACTATATGGTTCGTATGTATGACTTTCAAGGAATGAGTTCCCGGTTGCAATCGTTTCGACAACTCGAGCCATCTGAAGGGCATCAAATTCGCAATTTAAGCTGGAGTCCAACTGCAGACCGCTTTTTGTGTGTGACCGGTTCGGCTCAAGCTAAGATTTATGATCGCGATGGCCTCACTTTGGGCGAGTTTATAAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGGCATATAACTGGGCTGACATGTGGAGAGTGGCACCCAAAAAATAAGGAGACTATTTTAACATCATCTGAGGATGGGTCGCTCCGCATATGGGATGTGAATGACTTCACAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGCGCATGGGATCATGATGGTAAATGCATTGGTGGTGGTATTGGAGATGGTTCTATACAGATTTGGAGTATTAAACCTGGATGGGGGAGTAGGCCGGATATACATATTGAAAAATGTCACGAGGATGATATTACTAGTCTGAAATTTTCTACTGATGGGAGAATCTTATTGTCAAGGAGCTTTGATGATTCATTGAAGGTTTGGGATCTGCGCAAAACAAAAGAAGCATTGAAGGTATTTAAAGAACTGCCAAATCACTATGGACAAACAAATGTTGGCTTCAGTCCAGATGAGCAACTATTTTTTACTGGAACATCTTTAGAAAGGGATAGCTCAACAGGAGGTTTATTATGCTTCTTTGATAGAGTAAATCTTGAACTTGTTTCAAAAGTTGGCATATCCCCCACTTCCAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTCGCAACTGTTGGCGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCATCAGTGAGAGAGGAGCTCTTGTTTGTGTTGCTCGTGCACCAAGGAAAAAATCAGTTGATGACTTTGAGGCAAATCCTGTTATTCACAATCCTCATGCTTTACCTCTATTTAGAGATCAACCAAGCCGCAAGCGTCAGCGAGAGAAGGTATTAAAGGATCCATTGAAGTCACATAAGCCTGAACTACCCATGACAGGACCTGGCTTTGGTGGACGAGTTGGTACAAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGGGGTTTGATTAAGGAGACATGGATGGATGAAGATCCAAGGGAAGCTATCCTAAAATATGCTGATGTTGCAGCAAAGGAACCAAAGTTCATAGCTCCAGCATATGCTGAAACTCAACCTGAGCCATTGTTTGCGAAATCAGATTCTGAGGATGAAGAGAAATGA 1857 0.4502 MEEDGEIYDGARAEFPISFGKQSKSQTPLETIHNATRRSVPNSKTANDFPSVSSSSKQWLQSVRSSKNPTPLPPPPPSPPLHDDSPLVGPPPPPPHNDEKEEDDGDMIGPPPPPPGSNLDDSDSDEDSDQDLLGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYMVRMYDFQGMSSRLQSFRQLEPSEGHQIRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFIKGDMYIRDLKNTKGHITGLTCGEWHPKNKETILTSSEDGSLRIWDVNDFTSQKQVIKPKLARPGRVPVTTCAWDHDGKCIGGGIGDGSIQIWSIKPGWGSRPDIHIEKCHEDDITSLKFSTDGRILLSRSFDDSLKVWDLRKTKEALKVFKELPNHYGQTNVGFSPDEQLFFTGTSLERDSSTGGLLCFFDRVNLELVSKVGISPTSSVVQCSWHPKLNQIFATVGDKSQGGTHILYDPTISERGALVCVARAPRKKSVDDFEANPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGLIKETWMDEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSEDEEK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02774 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Vifa5g02774 618 MobiDBLite consensus disorder prediction 516 535 - -
Vifa5g02774 618 Gene3D - 236 476 IPR015943 GO:0005515
Vifa5g02774 618 Gene3D - 94 235 IPR015943 GO:0005515
Vifa5g02774 618 SMART WD40_4 238 281 IPR001680 GO:0005515
Vifa5g02774 618 SMART WD40_4 430 474 IPR001680 GO:0005515
Vifa5g02774 618 SMART WD40_4 140 179 IPR001680 GO:0005515
Vifa5g02774 618 SMART WD40_4 186 226 IPR001680 GO:0005515
Vifa5g02774 618 SMART WD40_4 336 375 IPR001680 GO:0005515
Vifa5g02774 618 SMART WD40_4 285 329 IPR001680 GO:0005515
Vifa5g02774 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 343 377 - -
Vifa5g02774 618 MobiDBLite consensus disorder prediction 599 618 - -
Vifa5g02774 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 181 - -
Vifa5g02774 618 FunFam WD repeat-containing protein 70 236 478 - -
Vifa5g02774 618 ProSitePatterns Trp-Asp (WD) repeats signature. 268 282 IPR019775 -
Vifa5g02774 618 FunFam Nucleotide binding protein 90 235 - -
Vifa5g02774 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 290 IPR001680 GO:0005515
Vifa5g02774 618 MobiDBLite consensus disorder prediction 1 132 - -
Vifa5g02774 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 384 IPR001680 GO:0005515
Vifa5g02774 618 MobiDBLite consensus disorder prediction 19 67 - -
Vifa5g02774 618 MobiDBLite consensus disorder prediction 516 544 - -
Vifa5g02774 618 MobiDBLite consensus disorder prediction 68 94 - -
Vifa5g02774 618 Pfam WD domain, G-beta repeat 342 375 IPR001680 GO:0005515
Vifa5g02774 618 Pfam WD domain, G-beta repeat 246 281 IPR001680 GO:0005515
Vifa5g02774 618 Pfam WD domain, G-beta repeat 145 179 IPR001680 GO:0005515
Vifa5g02774 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 283 - -
Vifa5g02774 618 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 617 - -
Vifa5g02774 618 SUPERFAMILY WD40 repeat-like 137 463 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02774 268 448 Miscellaneous Gene Families AT5G08390 25.824 9.32e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02774 K24752 - gmx:100815380 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02774 5 920024255 920027859 Vifa5g02774 5 920024255 920027859 ECH