Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02740 ATGTTGCTAAGAAGTTCTTCAACACCAGTTCTTGGTTCTCTTCTTTCATCCAGTTCCTTCACTGATAGTCCTAATCATTATCATGAGCCTTGTCATGCACTCAAGCATCTACCACCACCAACACATCACAATCACAACAAACTCTCTTTTCATCAATCTTGTTCTTTCAATCTCTCATGCACTTCTTCTCCGATTTCTCCTTCATTTGCAGATCTTGAAAGACAAAGCAAAGGTTTGATTAGAAGAGTCCAATCTGAAGGAAACTTGGAAGATCTAGCTTATGCTAATGAAGAGAGATTCAGTTATGTGGATCATTCTTCTATGAGGTATTCAGTAAGACAAAGATGCTTGCCACTTGAGACTATTCCGTCTTTTTCTCTTTCGAAGCGAACCGGTTTGCGCGAAGAAGAGGAAGATGTGGAAGAAAGTGATGTTGAAGATGAGGAAGGCTATGATGATGAGTTTAGTGTGATGAGTAGTATGAAGGTGAGTGCAGAAGCGGATAGAGTTTGTGGAGTGAGTTTTGGTGAGGAGGGAAAGTTTGGTAGTAAAGAAATGTATCTTGCAAAAGGGCTTGGTGTTGAGGTGTGTGGTGATGGAATAGGTGGTGGCTGCAGAGGAGGCAATGGAGGAGGTGGTGATTCTAATTCCATGGGATCTAGAGGGAATGAAGGAGATCATAATAATAATCACGAGGTGGAAGAATATTACAAGAAAATGGTGCAGCGAAATCCTGGGAACTCGTTGTTTCTGAGAAACTATGCTCAGTTTTTGTATCAGAGCAAACAAGACCGTGAAGGGGCAGAGGAGTATTACTCAAGAGCCATATTAGCAGATCCAAATGATGGAGAAGTTTTATCACAGTACGGAAAACTAGTTTGGGAGTTACATCAAGATGAAGAAAGAGCCTCTAGCTATTTTGAAAGAGCAGTACAAGCCTCTCCTGAAGACAGTCATGTACAAGCAGCATATGCAAGTTTTCTTTGGGATACTGAGGAAGACGAGGATGGAGGTTTCAATGACACGAAATGTTTACCTCGTTTTCAAATGGGAGCCATGGCTACTACTGGTGTTTAG 1077 0.415 MLLRSSSTPVLGSLLSSSSFTDSPNHYHEPCHALKHLPPPTHHNHNKLSFHQSCSFNLSCTSSPISPSFADLERQSKGLIRRVQSEGNLEDLAYANEERFSYVDHSSMRYSVRQRCLPLETIPSFSLSKRTGLREEEEDVEESDVEDEEGYDDEFSVMSSMKVSAEADRVCGVSFGEEGKFGSKEMYLAKGLGVEVCGDGIGGGCRGGNGGGGDSNSMGSRGNEGDHNNNHEVEEYYKKMVQRNPGNSLFLRNYAQFLYQSKQDREGAEEYYSRAILADPNDGEVLSQYGKLVWELHQDEERASSYFERAVQASPEDSHVQAAYASFLWDTEEDEDGGFNDTKCLPRFQMGAMATTGV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02740 358 Gene3D Tetratricopeptide repeat domain 223 337 IPR011990 GO:0005515
Vifa5g02740 358 SUPERFAMILY TPR-like 228 335 IPR011990 GO:0005515
Vifa5g02740 358 MobiDBLite consensus disorder prediction 208 229 - -
Vifa5g02740 358 SMART hat_new_1 263 295 IPR003107 GO:0006396
Vifa5g02740 358 SMART hat_new_1 298 330 IPR003107 GO:0006396
Vifa5g02740 358 SMART hat_new_1 228 260 IPR003107 GO:0006396
Vifa5g02740 358 MobiDBLite consensus disorder prediction 137 152 - -
Vifa5g02740 358 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 333 - -
Vifa5g02740 358 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02740 Vifa-Chr5 910575778 910577040 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02740 - - gmx:100788436 365.54