Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02739 ATGGCTTCTTCGTATCAGGGTTCCGTTAGTGCTGCCCAGGTGGGTTCTTACTTCGTGGGACAGTACTATCAAGTTCTTCGTCAACAGCCTGATCTTGTTCATCAGTTCTACTCCGATTTAAGCTCGATGATTCGTGTTGATGGCGATTATACCGAGAATGCATCTGATGTGTTGCAAATTCATAATATTGTTACATCGTTGAATTTTTCGGCAATTGAGATCAAGACGATCAATTCTCTTGACTCATGGAATGGAGGAGTGGTTGTGATGGTTTCGGGTGTTGTTAAGATCAAGGATGTCAATAGGAGGCAGAGGTTTGTTCAGACGTTTTTCCTTGCACCTCAGGAGAAGGGTTACTTTGTACTCAATGATATATTTCAGTTTGTTGAAGATGAAGTAGTGCATCAGAATCTGATACCGGTGACATCTGAGAGGATTGAATCACAGCCACATGTTAATGCTTCTTATGCTGAACCTCCAGTTTCGGACTATGGTTTTGAGGAAGAAGCAAGAGAATATATGAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCAGCAGCAGCAGCTACAAGAAGACCTCGAGACGGAAGTTGTGGTGGAGGAAACTCCTACACAGGAGGCATATCAACCGGTGCATAATGTTGCTCATACTATCCGTGAAACCCCTGTCGCCCTTGTGGAAGAGTCTTTTGAGGAGCCTGCTAAGAAGACTTATGCATCTATTTTACGTGTTGCCAAAGGCCAATCAGTGTTGCCCGCTGCACCCGAACATGCCTCACAGCATTCTTTTCAAAGTGCTCCTCCTTCAGAGTTTAATCATGTGACACAGCCTGCTGCTCAGCAGGCTGTGGTGCAGCCTGCTTATCAGCAGTCAAGCCCAGCATCTGCCTATGTTTCAGAGTCGGGGGCCGATGCAGCAGTGGAAGGCTACAGATTTGACCAAGAAGAAGTAACATCCGTCTATGTGAGAAACCTGCCTGCTGATATTACCGAAGCTGAGATCGACCAAGAATTTAAGAATTTCGGCAGAATTAAGCCAGATGGAATATTCGTAAGGGTGAAGCAGGAAATCGGAGTTTGCTATGCATTTGTGGAATTCGAAGACGTTATTGGTGTTCAAAATGCGCTTCAGGCTTCTCCAATACATATGGATGGAAGACCAATATACATTGAGGAGCGTAGACCAAGCACTAGCAGTGCCGCCCGAGGAGGAAGAGGAAGGGGAAGAGGTAGAGGCAGTTATCCAACAGATGCTCCAAGAGGGCGTTTTGGTGGTAGGAGCTCAGGAAGGGGATATTATCAGGATACTTCAGACTATACCAGACCCAGAGGCGACAGTTATGTTCAGTATGGTTCACGATAG 1383 0.4563 MASSYQGSVSAAQVGSYFVGQYYQVLRQQPDLVHQFYSDLSSMIRVDGDYTENASDVLQIHNIVTSLNFSAIEIKTINSLDSWNGGVVVMVSGVVKIKDVNRRQRFVQTFFLAPQEKGYFVLNDIFQFVEDEVVHQNLIPVTSERIESQPHVNASYAEPPVSDYGFEEEAREYMNSVHIDDDPVDKYSLPEQQQQLQEDLETEVVVEETPTQEAYQPVHNVAHTIRETPVALVEESFEEPAKKTYASILRVAKGQSVLPAAPEHASQHSFQSAPPSEFNHVTQPAAQQAVVQPAYQQSSPASAYVSESGADAAVEGYRFDQEEVTSVYVRNLPADITEAEIDQEFKNFGRIKPDGIFVRVKQEIGVCYAFVEFEDVIGVQNALQASPIHMDGRPIYIEERRPSTSSAARGGRGRGRGRGSYPTDAPRGRFGGRSSGRGYYQDTSDYTRPRGDSYVQYGSR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02739 460 CDD RRM_SF 327 398 - -
Vifa5g02739 460 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 441 IPR039539 -
Vifa5g02739 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 402 IPR000504 GO:0003723
Vifa5g02739 460 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Vifa5g02739 460 Gene3D - 3 133 - -
Vifa5g02739 460 MobiDBLite consensus disorder prediction 398 460 - -
Vifa5g02739 460 FunFam Nuclear transport factor 2 family protein 5 132 - -
Vifa5g02739 460 SUPERFAMILY RNA-binding domain, RBD 320 432 IPR035979 GO:0003676
Vifa5g02739 460 FunFam Nuclear transport factor 2 family protein 315 454 - -
Vifa5g02739 460 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Vifa5g02739 460 CDD NTF2 10 130 IPR018222 -
Vifa5g02739 460 SMART rrm1_1 326 398 IPR000504 GO:0003723
Vifa5g02739 460 Gene3D - 304 453 IPR012677 -
Vifa5g02739 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 385 IPR000504 GO:0003723
Vifa5g02739 460 SUPERFAMILY NTF2-like 10 131 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02739 Vifa-Chr5 910569683 910574216 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02739 - - cam:101501784 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02739 5 910569683 910574216 Vifa5g02739 5 910569683 910574216 ECH