Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02717 ATGGCAAGCGCAGGTCTGTACCGCAGAACCCTCCCTCCGCCTTCAATCGAGTTCTCTTCGGCGGAAGGAAAGAGAATCTTCACCGAAGCTCTTGCAAAGGGAACCATGAACGGTTTCTTCAAGTTAATTTCATATTATCAGACTCAATCAGAGCCCGCTTTCTGTGGTTTAGCCACTCTTTCTGTTGTCCTCAATGCTCTTGCCATTGATCCCGGTCGAAAATGGAAAGGTCCTTGGAGATGGTTTGATGATACAATGTTGGATTGTTGTGAGCCTTTGGACAAGATTAAGTCGCAAGGTATTACGTTCGGAAAAGTTGCGTGTTTGGCTCGATGTAATGGAGCTAAAGTTGAAGCCTTTCGATCGGATCAGAGTAATGTTGATGATTTTCGCAACCGCGTGATTTCGTGCTCTTCGCAGGAGGATTGTCATGTCATTGTGTCTTACCTCAGGACTCCACTTAATCAGACTGGAAGTGGCCATTTTTCACCGCTCGGAGGATATCATGCTGAAAGGGATATGGTCCTGATATTGGATGTTGCTCGATTCAAATATCCTCCTCACTGGGTTCCGCTAACCATTCTTTGGAATGCGTTGAATACCATTGATCAAGATACTGGACAACATAGGGGGTACATGATTATTTCAAGGCTTAACAGGGCACCATCAATACTTTATACTGTGAGTTGTAGACATGAAGGTTGGAGCAGTGTTGCCAAATTTCTAACTGAAGACGTTCCTCTTCTTCTAAAATCAGAGGATCTAAAAGAAATTCCGGAAGTGCTCTCTGTTGTATATAAATCTCCTCCTGCTGAATTGAGAGAGTTTATCACATGGATTGCTGAGGTTCGCAGGCAAGAAGACGGGAATCTCACATTGAGCGAGGAGGAGAGAGGGAGGCTAGCAATCAAGGCAGATGTACTGGAACAAATTCGGTCAACCGCACTCTTTAATCATGTGATCAAGTGGTTGGATTCAGAAAGATCATGCTGTGATACCGTTGCAAACCTTGGTGACAGAGATACGTTGTCGGCGCTTGCAGCACGTGTTTGCTGCCAAGGGGCAGATCTCTTGACTGGTTGTCGTTTGTCGGGCGGAAATTGCTGTAGTAAAATAGATGTAAAGCATCTGAATGTTGATAGTGAAAATCCAGTAACGTTGATTTCCGGAACCGTTACTACAACTGGATACAATAGTGAACAAGGAGTTGATGTACTGGTCCCTTTGTGTCTAAGGAAGCCGAGTAGCTTGTGTCTCTGTAATGAGGGCCAGTGCATTGGAATGCACCCATCTACTGCTGATGTCTTAACAGTGCTTTTATTCGCCTTGCCCTTGCATACTTGGTCTGGCATTAAAGAAGAAAAGCTGCGTATTGAAGTTGCGAGTCTTATAACAACCGAAGATCTCCCTCCCTTACTTTCTGAAGAGGTTTTGTTCTTGCGAGAGCAACTTCACTTTCTCATGACGGATAATGGTGCTCCTTCTACCTGA 1491 0.4474 MASAGLYRRTLPPPSIEFSSAEGKRIFTEALAKGTMNGFFKLISYYQTQSEPAFCGLATLSVVLNALAIDPGRKWKGPWRWFDDTMLDCCEPLDKIKSQGITFGKVACLARCNGAKVEAFRSDQSNVDDFRNRVISCSSQEDCHVIVSYLRTPLNQTGSGHFSPLGGYHAERDMVLILDVARFKYPPHWVPLTILWNALNTIDQDTGQHRGYMIISRLNRAPSILYTVSCRHEGWSSVAKFLTEDVPLLLKSEDLKEIPEVLSVVYKSPPAELREFITWIAEVRRQEDGNLTLSEEERGRLAIKADVLEQIRSTALFNHVIKWLDSERSCCDTVANLGDRDTLSALAARVCCQGADLLTGCRLSGGNCCSKIDVKHLNVDSENPVTLISGTVTTTGYNSEQGVDVLVPLCLRKPSSLCLCNEGQCIGMHPSTADVLTVLLFALPLHTWSGIKEEKLRIEVASLITTEDLPPLLSEEVLFLREQLHFLMTDNGAPST 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02717 496 Pfam Phytochelatin synthase 7 212 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Vifa5g02717 496 Pfam Domain of unknown function (DUF1984) 230 484 IPR015407 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Vifa5g02717 496 SUPERFAMILY Cysteine proteinases 11 216 IPR038765 -
Vifa5g02717 496 Gene3D - 15 220 IPR038156 -
Vifa5g02717 496 Coils Coil 496 496 - -
Vifa5g02717 496 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 4 483 IPR040409 GO:0016756|GO:0046872|GO:0046938
Vifa5g02717 496 FunFam Glutathione gamma-glutamylcysteinyltransferase 1 14 219 - -
Vifa5g02717 496 ProSiteProfiles Phytochelatin synthase (PCS) domain profile. 1 220 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02717 Vifa-Chr5 904843229 904845932 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02717 K05941 K17756 gmx:100782042 845.884