Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02688 ATGGACAAATCCAAGCTAGCTCTATTCGGCGAGAAGCTCAAAACCAACAGCGCCAATCTCAGCCGTATCGTCAGCGGCAAAATGAAGGAAATCCTCCAAACTCCCACGCCGGAATCGAAGATGGTAGACGAAGCAACGTCGGAAACACTAGAGGAGCCGAATTGGGGAATGAATCTGAGGATATGCGGACTTATTAACTCCGACGAGTTTAACGGTTCGGAGGTAGTGAAAGCGATCAAGAGGAGGATTAATCAGAAGAGTCCTGTGGTTCAGAAGCATTGCCTGGATTTGTTGGAAACTTGTGCGATGAATTGTGAGAAGGTGTTTTCGGTTATTGCGTCTGAGAAGGTTCTGGAGGATATGGTTAGGTTGATTGATAATCCGCAGGTGGAGCAGAGTAATAGGACAAGGGCTTTACAGTTGATTAGGGCTTGGGGTGAATCGGAGGACATTGCTTATCTTCCTGTTTTCAGTCAAACTTATTTGAGTTTGAAAGGAAGGGGTGAATCACTTGACGCGGCGGGAGGAAATTCACCACCAATTCCGTATGCCTCAGAGTCACATACTTATCAACAATCTTTAAACCCCCCTGAAAGATACCCAGTTCCAGAAGCAGGGTTACATGCTCTTGCTCTGGATGACTCAGAAGCTTTCTTTACTGACCACCAACCCGTTTCGGTTGAAGAGAAGAAAGAGCATCTTGTGGTTGCTCGAAACAGTCTTGAAGTTCTCTCTAGCATACTAAATTCTGAGGCAGAGCCAAAACCTTTAAAGGAAGAATTAACTTTGAGTCTGCTGGATAAGTGCAAGCAATCACTCTATGTTATCAAGGAGATTGTGCAAAGCACAACAAATGATGAAGAAACACTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAGCAGTTGGTTTCTAAGTATGAGGAGTTGGAAGCTTCTCAAAGTTTAGGGGAACAACAATCACAAAATGCTGACGCTGCCAAAAATGATGCGGAAGCTGTTCAAAACCTCAATGAAAGACGTGAAGGTGACAAATCTGAAGAGTCAGAAGCTGCTCAGAATCTTGATCGAAAGATACCCCAAAAGTCAAACACTCTTGAAGCCGGTGTCAATGCAACCGAGGTGCATGATCACATTGAAACCAAAATTGTGGATAGCACGAAAGAGAAGAATGGCGAATCTATCCTTAAGACTAATACCGAATGA 1206 0.4395 MDKSKLALFGEKLKTNSANLSRIVSGKMKEILQTPTPESKMVDEATSETLEEPNWGMNLRICGLINSDEFNGSEVVKAIKRRINQKSPVVQKHCLDLLETCAMNCEKVFSVIASEKVLEDMVRLIDNPQVEQSNRTRALQLIRAWGESEDIAYLPVFSQTYLSLKGRGESLDAAGGNSPPIPYASESHTYQQSLNPPERYPVPEAGLHALALDDSEAFFTDHQPVSVEEKKEHLVVARNSLEVLSSILNSEAEPKPLKEELTLSLLDKCKQSLYVIKEIVQSTTNDEETLFEALYLNDELQQLVSKYEELEASQSLGEQQSQNADAAKNDAEAVQNLNERREGDKSEESEAAQNLDRKIPQKSNTLEAGVNATEVHDHIETKIVDSTKEKNGESILKTNTE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02688 401 Pfam VHS domain 39 148 IPR002014 GO:0035091|GO:0043130
Vifa5g02688 401 Pfam GAT domain 238 311 IPR004152 GO:0035091|GO:0043130
Vifa5g02688 401 Gene3D - 218 315 IPR038425 -
Vifa5g02688 401 MobiDBLite consensus disorder prediction 314 401 - -
Vifa5g02688 401 Gene3D - 28 180 IPR008942 -
Vifa5g02688 401 ProSiteProfiles GAT domain profile. 187 312 IPR004152 GO:0035091|GO:0043130
Vifa5g02688 401 MobiDBLite consensus disorder prediction 373 395 - -
Vifa5g02688 401 MobiDBLite consensus disorder prediction 356 370 - -
Vifa5g02688 401 MobiDBLite consensus disorder prediction 314 329 - -
Vifa5g02688 401 PANTHER TOM1-LIKE PROTEIN 1 1 365 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vifa5g02688 401 CDD VHS 39 165 - -
Vifa5g02688 401 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Vifa5g02688 401 SUPERFAMILY GAT-like domain 194 311 - -
Vifa5g02688 401 Coils Coil 293 313 - -
Vifa5g02688 401 SUPERFAMILY ENTH/VHS domain 34 168 IPR008942 -
Vifa5g02688 401 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Vifa5g02688 401 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02688 Vifa-Chr5 895158794 895162519 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02688 - - mtr:25499268 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02688 5 895158794 895162519 Vifa5g02688 5 895158794 895162519 ECH