Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02656 ATGTCGAACCCCCAGAACCAGAAACCCTGGAAAGCTGAATACGCCAAATCGGGACGTTCATCATGTCGAACCTGCAAAAGTCCCATCGCTAGCGAAAAGCTTCGTCTCGGCAAGATGGTTCAATCTTCCATGTTCGACGGCCTCATGCCCATGTGGCACCATGCTGACTGCGTATTGAAGAAATCCAATCAGATTAAATTAGTTGATGATGTTGAAAACCTAGACACGCTTCGATGGGAAGATCAACAGAAGATTAGAACGTACATTGAGAGCGGTGGCGGTGGTGGTTCTACTTCTAAATCCAAGTCGAAGTCGAGTGCTGCATCAGCGTCTAAGTCGAGTGCGAGCAAGAATGTTGAATGTGGTATTGAAGTTTCACAAACTTCCCGTGCTGCTTGCAAGCATTGTGGTCAGAAAATTATTAAAGGAGAGGTTCGCATATCTACTAAGCCTGATGGTCAAGGTCCCAGGGGTTTGGCTTGGCACCACGCCAAGTGTCTCTTGGAACTATCACCATCAATTCAAGTTGAAAACTTGTCCGGATGGAATACTCTCTCATCTTCTGATCAATCAGCTGTCAATGACTTAGCTTTGAAAGGCCATCCTACGAACAAGAGAGAAGGTAGTGGTACAAATGTTGAAGCTGAAGAGTTTAAAGTATCCACATTGCAATCCTCTTCCAGAAGTGGCACAAAGCGGGGGAAAGATGCAGAGGGTGAGCAGAAGTCAAAAGCTGCTAAGGTCAAGGGAGACGTGTCTGTGGGTAGGGAAGCGGCAGTGAATGGGGAGGCAAGTGGTCTTGAGAATAGACTAGAGGCGCAGAGCAAAGAACTGTGGGCTTTGAAGGATGACCTTAAAAAACACGTGTCAAACGCAGAGATGCGTGAAATGCTGGAAGCCAATGATCAAGATTCGACTGGATCAGAGCTTGATTTGCGTGATCGCTGTGCTGATGGAATGATGTTTGGAGGACTATGTCATTGCCCACTATGTTCTGGTTTTCTGCGTTATTCTGGAGGAATGTACCGGTGTAGCGGTTACATTTCCGAGTGGAGTAAATGTTCCTACTCTACCTGTGAACCAAAACGTACTGAAGGGAAGTGGAAAATCCCAGAGGAAACAGATAATCAGTATCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAATTAGGATATTGCCTCCGCCATCTTCAAGGACTCCTGCAAAAAGTTCAATTTCTGCAGGCCAACATCAATCATCAAACAGTGAAAGTTTGGCAGATTTAAAAGTTGCCATCTGTGGATTACCCAAACCTTCTATTGACGAATGGAAACACAAAATTGACGGCATAGGTGGAGTTTTTCATGCAAAAGTGAAGAAAGATACTAGCTGCTTGGTGGTCAGTGGAGCGCTCAAGGACGAAGCTGAGATGCAGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATGGAAAGAAAAAAGAAGCTTCCGTTTGATATGTACAAAGTTGAAATGATTGGTGAGACTTCTAGCATGGTCACCGTCAAAGTGAAGGGGCAAAGTGCTGTTCATGATGCCTCTGGCCTACAGGATTCTGGCCACATACTGGAGGAAGGGAAAAGTATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATCCTTCAAATAATTGAAGAAGATAAGGGGTCAGATTGCTATGTGTTTCGTAAATGGGGTCGAGTGGGAAGTGACAAGATTGGAGGGTCCAAACTGGAAGACATGTCGAAATCTGATGCTATCAGGGAATTCAAACGACTATTCTATGAGAAAACTGGAAACCCTTGGGAGGCCTGGGAACAAAAAACTATTCAGAAGCAACCTGGAAGATTCTTCCCTTTGGAAATAGATTATGGAGTTAACAAACAAGTCTCAAAAAAGAATAAAAACAATGCAGACAGCAGCAAACTACCCCCTCAATTGAGAGAGTTGATGAAGATGCTCTTTAATGTGGAAACATACAGAGCTGCCATGATGGAGTTTGAGATCAATATGTCCGAAATGCCTCTTGGGAAACTCAGCAAAAGTAATATTCAAAAGGGTTTTGAAGCATTAACAGATATACAGAATCTTTTTACAAGTAGCAATCCCGATTCATCAGTCAGAGATAGCTTGCTTATTGATGCCAGCAATCGGTTCTTCACTGTAATCCCTTCTATTCATCCACATATTATTAGGGACGAGGATGATTTTAAGGCAAAGGTAAAAATGTTGGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCGACAGGGATGACTCCATTGATGATAATTATAAGAAGCTCCGCTGTGCTATGTCTCCACTTCCTCATGATAGTGAAGATTTTCGATTAGTCGAGAAGTATCTACATAATACTCATGCCCCCACACACGTGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGACACGGTGAATTTGATAAATATGCTCCTTACAGGGACAAAGTTGGTAACAGAATGCTATTATGGCATGGTTCTAGGTTGACGAACTTTGTGGGTATTCTTAACCAAGGACTAAGAATTGCACCTCCTGAAGCGCCTGCAACTGGATATATGTTTGGCAAAGGGATTTACTTTGCTGATCTTGTCAGCAAGAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCCCTTGGAAATGTCTACGAGCTCAAAAAAGCTAAGTATATGGATAAACCTCCCGCAGGAAAGCATTCTACTAAAGGACTGGGAAAGAAAATGCCTCAGGAATCAGATTATGTAAAGTGGAGAGGTGATGTAGTTGTTCCTTGTGGGAAACCAGTGTCATCAAATGTCAAGGCAACTGAGCTCATGTACAATGAGTATATTGTCTATAATACTTCTCAAGTTAAACTGCAATTCTTACTGAAGGTAAGGTTCCATCACAAGAAATGA 3024 0.4239 MSNPQNQKPWKAEYAKSGRSSCRTCKSPIASEKLRLGKMVQSSMFDGLMPMWHHADCVLKKSNQIKLVDDVENLDTLRWEDQQKIRTYIESGGGGGSTSKSKSKSSAASASKSSASKNVECGIEVSQTSRAACKHCGQKIIKGEVRISTKPDGQGPRGLAWHHAKCLLELSPSIQVENLSGWNTLSSSDQSAVNDLALKGHPTNKREGSGTNVEAEEFKVSTLQSSSRSGTKRGKDAEGEQKSKAAKVKGDVSVGREAAVNGEASGLENRLEAQSKELWALKDDLKKHVSNAEMREMLEANDQDSTGSELDLRDRCADGMMFGGLCHCPLCSGFLRYSGGMYRCSGYISEWSKCSYSTCEPKRTEGKWKIPEETDNQYLKKWFKSQKGKKPIRILPPPSSRTPAKSSISAGQHQSSNSESLADLKVAICGLPKPSIDEWKHKIDGIGGVFHAKVKKDTSCLVVSGALKDEAEMQKARRMKIPIVREDYLVDCMERKKKLPFDMYKVEMIGETSSMVTVKVKGQSAVHDASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIEEDKGSDCYVFRKWGRVGSDKIGGSKLEDMSKSDAIREFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLEIDYGVNKQVSKKNKNNADSSKLPPQLRELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLFTSSNPDSSVRDSLLIDASNRFFTVIPSIHPHIIRDEDDFKAKVKMLEALQDIEIASRLVGFDADRDDSIDDNYKKLRCAMSPLPHDSEDFRLVEKYLHNTHAPTHVDWSLELEEVFSLERHGEFDKYAPYRDKVGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPAGKHSTKGLGKKMPQESDYVKWRGDVVVPCGKPVSSNVKATELMYNEYIVYNTSQVKLQFLLKVRFHHKK 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02656 1007 ProSiteProfiles PARP alpha-helical domain profile. 657 775 IPR004102 GO:0003950
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 385 417 - -
Vifa5g02656 1007 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 10 93 IPR001510 GO:0003677|GO:0008270
Vifa5g02656 1007 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 207 - -
Vifa5g02656 1007 SMART PADR1_2 312 365 IPR012982 GO:0008270
Vifa5g02656 1007 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Vifa5g02656 1007 SMART zf_PARP_3 124 198 IPR001510 GO:0003677|GO:0008270
Vifa5g02656 1007 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 121 195 IPR001510 GO:0003677|GO:0008270
Vifa5g02656 1007 Pfam Poly(ADP-ribose) polymerase, regulatory domain 658 788 IPR004102 GO:0003950
Vifa5g02656 1007 FunFam Poly [ADP-ribose] polymerase 414 515 - -
Vifa5g02656 1007 Gene3D - 647 791 IPR036616 GO:0003950
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 205 230 - -
Vifa5g02656 1007 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 657 792 IPR036616 GO:0003950
Vifa5g02656 1007 Pfam PADR1 (NUC008) domain 314 364 IPR012982 GO:0008270
Vifa5g02656 1007 ProSiteProfiles PARP catalytic domain profile. 782 1007 IPR012317 GO:0003950
Vifa5g02656 1007 ProSiteProfiles WGR domain profile. 535 634 IPR008893 -
Vifa5g02656 1007 FunFam Poly [ADP-ribose] polymerase 650 791 - -
Vifa5g02656 1007 SUPERFAMILY WGR domain-like 513 639 IPR036930 -
Vifa5g02656 1007 CDD parp_like 658 1002 - -
Vifa5g02656 1007 FunFam Poly [ADP-ribose] polymerase 252 323 - -
Vifa5g02656 1007 FunFam Poly [ADP-ribose] polymerase 113 219 - -
Vifa5g02656 1007 Gene3D - 792 1007 - -
Vifa5g02656 1007 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 124 195 IPR001510 GO:0003677|GO:0008270
Vifa5g02656 1007 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 92 111 - -
Vifa5g02656 1007 Gene3D - 324 384 IPR038650 -
Vifa5g02656 1007 Gene3D - 2 113 IPR036957 GO:0003677|GO:0008270
Vifa5g02656 1007 Gene3D - 114 220 IPR036957 GO:0003677|GO:0008270
Vifa5g02656 1007 Gene3D - 255 323 - -
Vifa5g02656 1007 Pfam Poly(ADP-ribose) polymerase catalytic domain 802 1003 IPR012317 GO:0003950
Vifa5g02656 1007 FunFam Poly [ADP-ribose] polymerase 324 385 - -
Vifa5g02656 1007 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 257 397 IPR047572 GO:0008270
Vifa5g02656 1007 Pfam BRCA1 C Terminus (BRCT) domain 421 493 IPR001357 -
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 200 250 - -
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 1 24 - -
Vifa5g02656 1007 Coils Coil 264 284 - -
Vifa5g02656 1007 ProSiteProfiles BRCT domain profile. 416 506 IPR001357 -
Vifa5g02656 1007 FunFam Poly [ADP-ribose] polymerase 792 1007 - -
Vifa5g02656 1007 PIRSF NAD_ADPRT 3 1007 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Vifa5g02656 1007 FunFam Poly [ADP-ribose] polymerase 4 106 - -
Vifa5g02656 1007 PANTHER DNA LIGASE 120 1005 - -
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 88 111 - -
Vifa5g02656 1007 SUPERFAMILY BRCT domain 417 506 IPR036420 -
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 400 417 - -
Vifa5g02656 1007 CDD WGR_PARP1_like 536 641 - -
Vifa5g02656 1007 SUPERFAMILY ADP-ribosylation 791 1006 - -
Vifa5g02656 1007 Gene3D BRCT domain 411 514 IPR036420 -
Vifa5g02656 1007 SMART WGR_cls 546 629 IPR008893 -
Vifa5g02656 1007 SMART BRCT_7 418 496 IPR001357 -
Vifa5g02656 1007 Pfam WGR domain 546 624 IPR008893 -
Vifa5g02656 1007 MobiDBLite consensus disorder prediction 231 250 - -
Vifa5g02656 1007 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02656 Vifa-Chr5 884013162 884023574 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02656 K24070 - gmx:100815900 1650.95