Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02610 ATGGCTATTGCACTGAAATCATCATGCTTCTTGCAATTGAAGAAAGCTGAAACCGGTTTCAATAATCTCAGTTTTTCCTCCAACAATGTTTCAATGATCTCAGCTAAGAGATACATTTCGGTTTCTGCTACTGCTAACAGGACTATTGAAGCAGTTAGCATCTCTGAAACATTCAACAGCCTCAAAAAACAAGGCAAAGTGGCTTTAATCCCGTACATCACAGCTGGTGATCCTGATCTTGCAACCACAGCAGAAGCATTGAAAGTTCTTGATTCATGTGGATCTGACATTATTGAACTCGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCTGTTATCCAGGCTGCTTCTACAAGATCTTTAGCAAGAGGAACCGATTTTGATTTGATTATTTCTATGTTGAAGGAGGTTGTTCCAGAATTATCTACTCCAATTGCATTGTTTACTTATTACAATCCAATTCTGAAACGTGGAACTGCGAGATTTATGTCCATTGTAAAAGAAACCGGTGTTCATGGGCTTGTAGTCCCTGATGTTCCTCTGGAGGAGACAGAAACTTTAAGGAAAGAAGCTAAGAAGAATGGAATTGAACTGGTACTCCTCACAACACCTACCACTCCGACTAACCGAATGAAGGCCATTGTTGATGGTGCAGAAGGATTTGTCTACCTTGTGAGTTCTTTGGGGGTCACTGGAACTCGCGCTTCAATTAGTGGTAAAGTTCAGGCTCTTCTGAAAGAAATCAAAGAGGCAACACCTAAGCCTGTGGCAGTTGGCTTCGGGATATCAACGGCCGAGCAAGTGAAGCAGGTAGCGGGATGGGGTGCTGATGGTGTGATTGTTGGAAGTGCTATGGTCAAGTTGCTTGGAGAGGCCAAAACTCCTCAAGAGGGATTGAAAGAGCTCGAAAATTTCACCCTCTCCTTAAGATCTGCACTTGATTGA 948 0.4272 MAIALKSSCFLQLKKAETGFNNLSFSSNNVSMISAKRYISVSATANRTIEAVSISETFNSLKKQGKVALIPYITAGDPDLATTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAASTRSLARGTDFDLIISMLKEVVPELSTPIALFTYYNPILKRGTARFMSIVKETGVHGLVVPDVPLEETETLRKEAKKNGIELVLLTTPTTPTNRMKAIVDGAEGFVYLVSSLGVTGTRASISGKVQALLKEIKEATPKPVAVGFGISTAEQVKQVAGWGADGVIVGSAMVKLLGEAKTPQEGLKELENFTLSLRSALD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02610 315 ProSitePatterns Tryptophan synthase alpha chain signature. 98 111 IPR018204 GO:0004834
Vifa5g02610 315 Pfam Tryptophan synthase alpha chain 58 308 IPR002028 GO:0004834|GO:0006568
Vifa5g02610 315 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 48 314 IPR002028 GO:0004834|GO:0006568
Vifa5g02610 315 NCBIfam tryptophan synthase subunit alpha 58 310 IPR002028 GO:0004834|GO:0006568
Vifa5g02610 315 CDD Tryptophan_synthase_alpha 68 311 IPR002028 GO:0004834|GO:0006568
Vifa5g02610 315 FunFam Tryptophan synthase alpha chain, chloroplastic 52 315 - -
Vifa5g02610 315 Gene3D Aldolase class I 52 315 IPR013785 -
Vifa5g02610 315 SUPERFAMILY Ribulose-phoshate binding barrel 54 294 IPR011060 -
Vifa5g02610 315 Hamap Tryptophan synthase alpha chain [trpA]. 64 313 IPR002028 GO:0004834|GO:0006568
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02610 Vifa-Chr5 870955538 870957574 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02610 K01695 - gmx:100808400 456.832