Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02556 ATGGCTTCCCAAATATCAGTTTGCGTTACTCCCATGCTTCAATCTTCTGGTGTCAAACATTCTGCCAACTCCAACTATCCCTTCAACTTAACCCTTCAATCATCTCTTCATTCCTTGAGAGGTACACGTCCCGTCAGAATTGTCAAAGCAACACACGATAAGAATTCTGATAGATCTCAGCCAATCGATTCACAAGCTTCACAAGACACTGTGCTTTCCAATGAGATTCTGAAGAAGGATGCATATGCTGAATCTTTTCATCAGATTATGATGACCACCAAGATTAGAATGCAAATAAATGAAGTGAAAAAGATGTTGAGGTCCATGGAAGATGGAGAGATAAACATATCAGCTTATGACACTGCTTGGGTGGCTCTAGTGAAAAATGTTGATGATGAAAATAAGCCACAATTCCCATCTTCTCTTCAATGGATTGTGGAGAATCAACTTCCTGATGGTTCATGGGGAGATAAACTATTTGTGGCACATGACAGGATTCTCAACACCTTGGCTTGTGTCATTGCATTGAAATCATGGAATGTGCACCCTGACATTTGTGAGAAAGGAATGAAATTTTTTATGGAAAATCTAAACAAGATTCAAGATGAGAATGTTGAGTACATGCCTATTGGGTTTGAAGTTGTTTTTCCTTCTCTTCTCAACATAGCTAAACGTTTGAATATTGAAGTGTCAGAAGATTCCTCAATCTTGAAAGAAATATTTATAATGAGAGACCAAAAACTCAAAAAGATTCCAAGAGAAGTGTTGCACAAGGTACCTACAACATTGCTTCATAGTTTAGAAGGAATGCAAGATTTGGATTGGAACCAACTTCTACAGCTTCAGTCCCAAGATGGGTCATTCTTGTTCTCTCCATCCTCCACAGCTTTTGCTATTATGCAAACTGGCGACAAAGATGCTCTCGACTACCTGCAAAAAATTGTCGAGAAGTTCAATGGAGGAGTTCCAAATGTCTTCCCGGTTGATTTGTTTGAGCATATATGGGTTGTGGATCGGCTAGAACGCCTCGGAGTTTCAAGATATTTTAAGCAAGAGATCATGGACTCTGTGAACTATTTGGCAAGATACTGGACAGAGAAAGGAATTTGTTGGGCAAGAAATTCAGAAGTTCAAGATATTGATGACACAGCAATGGGATTTAGACTTTTAAGGTTGCATGGCCATCAAGTTTCACCCGACGTGTTCAAGCATTTTGAGAAAAATGGTGAATTCTTTTGTTTTGCGGGACAGTTGAACCAAGCCGTGACAGGCATGTTCAATCTATATAGAGCTTCACAAGTGTTGTTTCAAGGAGAGGAGATTCTTGAGAATGCCAGAAACTTTTCTTCCAGATATCTATCTAAGAAACGTTTTCTTAATCAACTTCTTGATAAATGGATCATAACTAAAGATTTACCTGGCGAGGTTGGTTATGCTTTGGATGTGCCGTGGTATGCTAGCTTACCCCGATTAGAGGCAAGATTTTACCTCGAGCAGTATGGTGGAAAAAATGATGTTTGGATTGGCAAGACCCTTTATAGGATGCCGCTCGTGAATAATGATGTTTATCTGGAGCTTGCAAAACTGGATTACAACAATTGTCAAGCGATGCATAAGAAAGAATGGGAAGAAATCCAGAGGTGGTACTTGGAATCAGATCTAGAAGGATTTGGATTGAGCAAAAAGAATCTTTTGTACGCTTATTTTATAGCAGCAGCCAACATATTTGAGCCTGAGAAGTCTTTAGAGAGACTTGCATGGGCTAAAACAGCAGCTTTGCTTCGGATACTGAAGTCGTATTCTAATGGCGTAAAAGAATTTGGCGATCAGTTAAATGAGTTCATTAAAGGAGGAAACAACTCAAACAAGTGGTCAAAGAACGAGAGAGATGAAAAACTCCTGGGAGTTTTGCTAAGTACCCTTAATCTCATTGGCTTTCAAATGTTTAGGCGCCATGACCAAGAAAATTCACATTATTTGAATCGAATGTGGCAAAGTTGGTTCTCAAGTTGGGCTAGTAAAGGACTCAGATCCCCAGGAGATGCAGAATTACTAGTGCAAATCATAAATTTAACCTCTGGGAATTGGTCAGAAGATCTAGATCTTGATCCCCAGTATCAGAAATTGCTTGAAGTCACTAAGAGAGTTTGTGTTAGCATCCATAATTACGAATGCAACTGGGTACAAGTTGGCAGCGATTGCAAAAAAGTAGAGTCAGAGATGCAAGAACTAGTGCAATTGGTGCTTCAAAGTTCTCAAAATGATTTGCACTCCAGTATCAAGAATTCATTCCTCATGGTGGCCAAGAGTTTTTACTATGCAGCGTATTGTGACCCAGTGATCATTTCCTATCATATTGATAAAGTTCTTTTTCGAAAAGTGATTTAA 2388 0.3915 MASQISVCVTPMLQSSGVKHSANSNYPFNLTLQSSLHSLRGTRPVRIVKATHDKNSDRSQPIDSQASQDTVLSNEILKKDAYAESFHQIMMTTKIRMQINEVKKMLRSMEDGEINISAYDTAWVALVKNVDDENKPQFPSSLQWIVENQLPDGSWGDKLFVAHDRILNTLACVIALKSWNVHPDICEKGMKFFMENLNKIQDENVEYMPIGFEVVFPSLLNIAKRLNIEVSEDSSILKEIFIMRDQKLKKIPREVLHKVPTTLLHSLEGMQDLDWNQLLQLQSQDGSFLFSPSSTAFAIMQTGDKDALDYLQKIVEKFNGGVPNVFPVDLFEHIWVVDRLERLGVSRYFKQEIMDSVNYLARYWTEKGICWARNSEVQDIDDTAMGFRLLRLHGHQVSPDVFKHFEKNGEFFCFAGQLNQAVTGMFNLYRASQVLFQGEEILENARNFSSRYLSKKRFLNQLLDKWIITKDLPGEVGYALDVPWYASLPRLEARFYLEQYGGKNDVWIGKTLYRMPLVNNDVYLELAKLDYNNCQAMHKKEWEEIQRWYLESDLEGFGLSKKNLLYAYFIAAANIFEPEKSLERLAWAKTAALLRILKSYSNGVKEFGDQLNEFIKGGNNSNKWSKNERDEKLLGVLLSTLNLIGFQMFRRHDQENSHYLNRMWQSWFSSWASKGLRSPGDAELLVQIINLTSGNWSEDLDLDPQYQKLLEVTKRVCVSIHNYECNWVQVGSDCKKVESEMQELVQLVLQSSQNDLHSSIKNSFLMVAKSFYYAAYCDPVIISYHIDKVLFRKVI 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02556 795 SFLD Terpene Cyclase Like 1 N-term 90 514 - -
Vifa5g02556 795 Gene3D - 118 329 - -
Vifa5g02556 795 Gene3D - 101 532 IPR036965 GO:0010333|GO:0016829
Vifa5g02556 795 Pfam Terpene synthase family, metal binding domain 524 672 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vifa5g02556 795 Gene3D Farnesyl Diphosphate Synthase 534 795 IPR008949 -
Vifa5g02556 795 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 119 300 IPR008930 -
Vifa5g02556 795 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 93 792 - -
Vifa5g02556 795 FunFam Ent-copalyl diphosphate synthase, chloroplastic 307 531 - -
Vifa5g02556 795 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 90 514 - -
Vifa5g02556 795 Pfam Terpene synthase, N-terminal domain 274 480 IPR001906 GO:0010333|GO:0016829
Vifa5g02556 795 FunFam Ent-copalyl diphosphate synthase 118 329 - -
Vifa5g02556 795 SUPERFAMILY Terpenoid synthases 519 672 IPR008949 -
Vifa5g02556 795 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 285 505 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02556 Vifa-Chr5 849993393 849998319 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02556 K04120 - mtr:25499121 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02556 5 849993393 849998319 Vifa5g02556 5 849993393 849998319 ECH