Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02548 ATGAGTGTTCAATTTCAACTATCATCATGCTTATGGACTCCCAACTCTCCATCTCCACAATTTTCTGCAAAATTTCTTCCCAACCGTCCAAGATTCTCCACATCACCTCTCCCTGCCACACCAACACTCTCATCTCAATCTCCAACCATTCAGATAATTGGCAACAACACATTTGATGGTAACCTAGGGGAGACTGATATTTGGACTGCTATTGACACTGATCTTTCTCACTGGACAAATGTTCTGCGTCCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAGGAACTGAAGGAACAACTTAAGTTGATGGATGTTGTTATAGAGATGGATTTATGGCTTGGTAATAGAAAGAGAATTTTGGTTTTAAATAGAGAAGACATGATATCGACTGCAGATCGAAATGCTTGGGCAGAATATTTTGCTAAGCTTGGAACAAAGGTTGTCTTCTCCAATGGGAAGCTTGGAATGGGCACTTTGAAGCTTGGCCGGTTAGCAAAGGAATTGGCAGCTGATGTAAATGTTAAACGGAAGGCTAAAGGATTACTTCCTCGTCCGATTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCGTCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCAAGGCCAGGAGTTACAAGAACATTGAGGTGGATTCGATTTGGGAAAGATCTTGAATTGCTGGATTCTCCCGGGATACTTCCTATGCGAATCAGTGACCAGTCAGCCGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGATCCTATGATGTGGATGATGTTGCTGCAATTCTTGTACAGATGCTCTCAAAGCTTCCAGCTGTAGGTCGAGATGCACTTTGTAAACGATACAAGTTTCACGTAGACAGTGAATGTGGTAAAATATTCGTAGAGAAGCTTGCGCTTCATTTGTTCAATGGAGATGTTCATCAAGCAGCATTCCGAGTCCTGTCAGATTTTAGAAAAGGTAGGTTTGGTTGGACTGCACTGGAGAGGCCTTCTAGGTGA 1044 0.4272 MSVQFQLSSCLWTPNSPSPQFSAKFLPNRPRFSTSPLPATPTLSSQSPTIQIIGNNTFDGNLGETDIWTAIDTDLSHWTNVLRPVQWFPGHIAKAEKELKEQLKLMDVVIEMDLWLGNRKRILVLNREDMISTADRNAWAEYFAKLGTKVVFSNGKLGMGTLKLGRLAKELAADVNVKRKAKGLLPRPIRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRTLRWIRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVDDVAAILVQMLSKLPAVGRDALCKRYKFHVDSECGKIFVEKLALHLFNGDVHQAAFRVLSDFRKGRFGWTALERPSR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02548 347 Gene3D - 249 337 IPR023179 -
Vifa5g02548 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 256 IPR027417 -
Vifa5g02548 347 Coils Coil 92 112 - -
Vifa5g02548 347 Pfam 50S ribosome-binding GTPase 191 251 IPR006073 GO:0005525
Vifa5g02548 347 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 74 346 - -
Vifa5g02548 347 CDD YlqF 87 244 - -
Vifa5g02548 347 NCBIfam ribosome biogenesis GTPase YlqF 85 343 IPR019991 -
Vifa5g02548 347 Gene3D - 85 244 IPR027417 -
Vifa5g02548 347 FunFam DAR GTPase 3 chloroplastic 85 244 - -
Vifa5g02548 347 FunFam Mitochondrial GTPase 1 249 337 - -
Vifa5g02548 347 PRINTS GTP1/OBG GTP-binding protein family signature 237 252 IPR006073 GO:0005525
Vifa5g02548 347 PRINTS GTP1/OBG GTP-binding protein family signature 191 211 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02548 Vifa-Chr5 846644248 846647359 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02548 K19828 - gmx:100784201 538.11