Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02539 ATGGAAGCAACGCGATTCTCTCTCTATCACTTCCATCCTCACAACTTCCGACCCTCACCCACCGCACTTCTCTCAGGAAGAAGACACGCAGAAACTAGGGTTTCACTTTTCACCAGAAACTCACATTCGCTTAACCGGAGGATTTCCGTTAACTTCTCCGACCGACTCCGAAGCGATTATATCCGTTCCGAGACGCCGTTTTTTAGTGATGAATCTGTTCCGGAGACTCGCGGCGAAGACGATGAAGCAATTGTTGGTTCTTCTGGCGGTGATAGCTTGTTAGCCTTAGAGATGAAACCTAGAGCGTTTAAAAATAGGTTTCTGAATTTTGTGCGGTTTGGTTCTGTTATTAATGGTGCTGCTGAGGCGTTTTTCAAGAGTGAGATTCGGAGGAGGTTGTTTGTTACTGCTGTGTTGATTGTGATTAGTCGGGTTGGTTATTTTATTCCTCTTCCTGGATTTGATAGAAGGTTGATACCAAAAGATTATATGAGCTTTGTCTCTGGTTCATCTGTTGATGAACTTGGTGACTTCTCCTCTGAGCTCAAGCTATCTCTTTTCCAGCTTGGAATCAGTCCTCAAATAATAGCATCCATTATTATGCAGGTATTCTGTCATGTTGTTCCATCTCTAGTAAAGTTGCGGAAAGAAGGTTTGGATGGGAATGAGAAGATTAAGAGTTACATTTGGTGGCTGTCGCTGGGCTTTGCAGTTATAGAAGCTCTAATTGTTTCTTGCTACTCACTTCCATACTCAATTTATGCTGCTAGTTATAGGTTTAAACATGTAATGGTGACAACTTTTTTTTTGGTTTGTGGTGCAATGACTATTACATGGATATGTGATACCATATCAGAATCTGGATTTGGTCAAGGTTCATCTCTTATCATATGTGTTGGAATACTGATTGGGTATATGGAGACGTTACACAAAATGCTTACTCAGCTTTCAGCGAGTGCTGTTAGTTGGTGGCCATATGTGCTTGCAGTATTGGGCCTCTTCACCATAGTCACTATGTGGGCAGTTGTAGTTACTGAAGGTTGCAGGAAAGTAAAGCTTCAGTACTATGGTTTTAAGCTTGCTTCTGCTGCAAGGGAGCAATCGCCTATAACTGAAGTGGAGCCCTATATTCCTTTCAATATTAATCCAGCAGGGATGCAACCTGTTCTTACCACCTCTTACCTCTTGGCCTTTCCAAGCATTGTCGCTAGTTTGCTTCAGTCACCTTTTTGGGAGCGTGTGAAGGAAATGTTGAATCCCGACTCTTCTGTTGGCGCTGAACCATGGGTCTACTATTCTATATATGCCTTCTTTGTCTTCCTTTTCAATATATTTGATATTGCTAACTTGCCAAAGGAAATTGCCGATTACTTGAATAAGATGGGTGCAAGGATACCTAATGTTAAGCCTGGGAAGGCTACGATAGAATACCTCTCAAAGGTTCAGGCATCCACACGATTTTGGGGGGGCCTACTGTTAAGTGTTTTGGCCACTACTTCAAGTGTTCTCGATCACTATTTACGGCGTACAAATGCTGGATTTGCTATTGGTTTTACATCAATTCTAATTATTGTTGGTTCCATTATTGAACTTAGAAGATCGTATCAAGCATATAACGTGATGCCAGGATTAAGCAATGCTTTGAAACGTTATGGTGTATAA 1662 0.417 MEATRFSLYHFHPHNFRPSPTALLSGRRHAETRVSLFTRNSHSLNRRISVNFSDRLRSDYIRSETPFFSDESVPETRGEDDEAIVGSSGGDSLLALEMKPRAFKNRFLNFVRFGSVINGAAEAFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPKDYMSFVSGSSVDELGDFSSELKLSLFQLGISPQIIASIIMQVFCHVVPSLVKLRKEGLDGNEKIKSYIWWLSLGFAVIEALIVSCYSLPYSIYAASYRFKHVMVTTFFLVCGAMTITWICDTISESGFGQGSSLIICVGILIGYMETLHKMLTQLSASAVSWWPYVLAVLGLFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREQSPITEVEPYIPFNINPAGMQPVLTTSYLLAFPSIVASLLQSPFWERVKEMLNPDSSVGAEPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLSKVQASTRFWGGLLLSVLATTSSVLDHYLRRTNAGFAIGFTSILIIVGSIIELRRSYQAYNVMPGLSNALKRYGV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02539 553 Pfam SecY 185 531 IPR002208 GO:0015031|GO:0016020
Vifa5g02539 553 Gene3D SecY subunit domain 117 543 IPR023201 -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 133 151 - -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 184 204 - -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 429 451 - -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 286 309 - -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 384 403 - -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 517 535 - -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 260 285 - -
Vifa5g02539 553 PRINTS Preprotein translocase SecY subunit signature 225 248 - -
Vifa5g02539 553 FunFam Preprotein translocase subunit SCY2, chloroplastic 117 543 - -
Vifa5g02539 553 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 123 540 IPR002208 GO:0015031|GO:0016020
Vifa5g02539 553 SUPERFAMILY Preprotein translocase SecY subunit 113 538 IPR023201 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02539 38 553 Miscellaneous Gene Families AT2G31530 72.285 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02539 - - gmx:100803256 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02539 5 840251955 840257913 Vifa5g02539 5 840251955 840257913 ECH