Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02528 ATGAGTTACAGCCCCCAAAAAATGTCCCCTCCAAATCTCACCGGAAATTCCTTCGTGTACGACGCCGACGACATTCCGTTCGGCACCGTTTGGTGGTTTATCTATGGCGGAATTTCTTGTGTTCTCGTTATCTTTGCCGGTATCATGTCTGGACTCACCCTTGGCTTAATGTCTTTCCGTCCTGTGGAGCTTGAAATTCTCCAAAGGAGTGGCTCTTCCACCGAGAAAAAACAAGCTGCCGCTATTTTTCCTGTTCTTCAAAAACAACACCAACTGCTTGTTACTTTGCTTCTTTGTAATGCTTGTGCCATGGAGGCGCTTCCAATTTACCTTGATAAAATATTTCATCCTTTTGTAGCAGTGGTGTTATCAGTAACTTTTGTTCTGTCTTTTGGAGAGGTCATCCCGCAAGCTATATGCACGAGATATGGACTCTATGTTGGTTCCAGATTTGTTGGGCTTGTACGCGTTCTGATGATCATTTGCTATCCGATTGCTTGCCCTATTGGAAAGGTTCTGGATGTTTTGCTTGGACACCATGATGTACTGTTTAGGCGAGCACAATTGAAAGCCCTTGTTTCAATCCATAGCGAAGAGGCTGGTAAAGGAGGTGAACTCACACATGATGAGGCGACAATCATCAGTGGAGCACTAGATCTCACTCTGAAGACTGCAGAGGAAGCTATGACGCCAATCGAGTCAACTTTTTCATTGGATGTTGCTTCAAAATTGGACTGGGAAGCAATTGGGAAAATTCTTGAACGAGGTCATAGTCGCATCCCTGTATACAGTGGAAACCCCAAAAATATAATTGGCATCTTACTAGTAAAAAATCTTCTTACCATAAGAGCTGAGACAGAGAGTCCAGTTAGTTCTGTCTCCATCCGGAAAATTCCTAGGGTTCCAGCAGATATGCCTTTATATGATATCCTCAACGAGTTTCAAAAAGGTAGCAGTCATATGGCAGCTGTAGTCAAGGTTAGAAGAGAGAAAAACAACCCTCAGGTAGCTAGTGGCTTTGACAAATCCAAAGATGAAGTATTCATCAAACATAGTTCTGAACTGACTGTGCCGTTGCTAGTCGGGTCTTATGAGAAATCAAACAATGTTATCGATATTGACAAGCTTTCTAGGCATCAAAACTATGGAGGATGTGATGATGCCAACAATGTCGACCAACAATGCCTAGAAAATGAAACTCCGCCAAATTGTTTCCATCACTTTCCTTATGATAAAGACGGAGAAGTTATTGGCATCATAACCTTGGAAGATGTTTTTGAGGAACTCCTGCAGGAAGAAATTGTGGATGAGACAGATGTGTATATTGATGTGCATAGGAGAATACGTGTTGCTGCTGTCGCAGCTGCTTCATCCGTGGCACGAGTTCCATTAGGCCAAAAGGTGAAAGTTTGA 1413 0.4289 MSYSPQKMSPPNLTGNSFVYDADDIPFGTVWWFIYGGISCVLVIFAGIMSGLTLGLMSFRPVELEILQRSGSSTEKKQAAAIFPVLQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVVLSVTFVLSFGEVIPQAICTRYGLYVGSRFVGLVRVLMIICYPIACPIGKVLDVLLGHHDVLFRRAQLKALVSIHSEEAGKGGELTHDEATIISGALDLTLKTAEEAMTPIESTFSLDVASKLDWEAIGKILERGHSRIPVYSGNPKNIIGILLVKNLLTIRAETESPVSSVSIRKIPRVPADMPLYDILNEFQKGSSHMAAVVKVRREKNNPQVASGFDKSKDEVFIKHSSELTVPLLVGSYEKSNNVIDIDKLSRHQNYGGCDDANNVDQQCLENETPPNCFHHFPYDKDGEVIGIITLEDVFEELLQEEIVDETDVYIDVHRRIRVAAVAAASSVARVPLGQKVKV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02528 470 CDD CBS_pair_CorC_HlyC_assoc 224 325 IPR044751 -
Vifa5g02528 470 PANTHER METAL TRANSPORTER CNNM 16 453 IPR045095 GO:0010960
Vifa5g02528 470 Pfam Cyclin M transmembrane N-terminal domain 38 209 IPR002550 -
Vifa5g02528 470 ProSiteProfiles CNNM transmembrane domain profile. 28 210 IPR002550 -
Vifa5g02528 470 Gene3D - 210 340 IPR046342 -
Vifa5g02528 470 SUPERFAMILY CBS-domain pair 216 431 IPR046342 -
Vifa5g02528 470 FunFam DUF21 domain-containing protein At4g14240-like 210 347 - -
Vifa5g02528 470 Gene3D - 398 437 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02528 Vifa-Chr5 837140821 837144046 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02528 K16302 - gmx:100777230 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02528 5 837140821 837144046 Vifa5g02528 5 837140821 837144046 ECH