Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02524 ATGACAAATCTCTTGCCATCATTTTCATTTTCAGTGATTCCACTTAATCAGCATAAATATGAAACCAAATGCTCCTTTTTTCACACTTCCTTGGATCAGAACCAACTTGTTAGTAAAAGTTTGCAAGATCTCATAATACCCTTTTCTTTGAATTTTACTTCAAAGCTGTGTGCCACGTCATCAAGGTTGTCTATACAAGAAACTGAGCAGAAACAATCAGAAGATATCAAAACAGCATTGCCTTATTTGTTTCGGACAGAAATAGGTGAAGGTTTGGTCAAAGTTTATGTCAAAAAGAAAAAAGATACTTATTTTGTTTATATTGAGGTTTCTTCTTTAGTGTTAAGTAACGTTGAAAGGGAAACATTTGTCTTGTGTTGGGGTGTGTATAGTCATGATTCCTCAACTGTGGATTCTGGGAAAGGGATGAATGTGAGTCCCTTTGTGAAGAATTCCCTTGGAAAATTTTCAGTTGAATTGGAATTTGGTGTTGGACAAGTTCCTTTCTACTTGTCTTTTTTGTTGAGATTGTCTGGATTGGAAATCAGAACCCATTTGAAAAGGAATTTTTGCGTGCCTGTTGGTTTTATTCGGGGTTGCCCGTCTCCATTGGGGATCTCTTTTTTCCCTGATGGGTCTATCAATTTCGCAGTTTTTTCAAGGCATGCAGAGGGTGTGGTTTTGTGTCTGTATGATAACAATGATGACACTGGTGTGAAGAAGCCTGCTTTGGAGCTTGATCTTGATCCGTATGTCAATAGGTCAGGTGATATATGGCATGTCTCTTTGGAGAATGCAAAGACTTTTGTAAGCTATGGTTATCGCTTTAGAGGAGTTAACAGCAATAACAGTTATGCTGAGTGTGTTGTTTTGGATCCTTATGCTAGAATTGTTGGGAATTCGTTTCCTAATGGTATTGGGTCGGTGAAGAACCTTGGATTTTTGAGAAAGGAACCTGCTTTTGATTGGGGTGATGATTATCATCCGAATTTGGACATGGAGAAACTAGTGGTGTATAGGTTGAATGTGAAGCGCTTTACCGAGCATGAGTCAAGTAACCTTTCCGGTGACTTAGCTGGGACATTTTCTGGTTTGGCAAAGAAGTTGCAGCATTTTAAAGATCTGGGTGTGAATGCTGTTCTGTTGGAGCCAATTTTCACATTCGATGAGGAAAAGGGGCCTTATTTTCCTTGTCACTTTTTCTCTCCAACGAACCTTTATGGACCTTCTGGTGATCCTGTATCTACTATAAATTCAATGAAAGAGATGGTGAAAACTATGCATGCCAATGGAATAGAAGTTATAATGGAAGTTGTTTTTTCCAATACAGCCGAGGTTGGTGCTCTGCAAGGTATTGATGACTTATCTTACTATTATGCAAATGGTGTTTGTGGTTTAAAGGTACACAGTGCTTTGAATTGTAATTATCCTATAATGCAAAATTTGATTTTGGATAGCCTTAGGCATTGGGTAACTGAGTTTCACATTGATGGCTTCTCATTTGTAAATGCTTCACATTTGTTGAGGGGGTATCATGGAGAATACTTGTCTCGACCTCCCTTGGTTGAAGCAATTGCTTTCGATCCTGTACTGTGGAAAACTAAAATCATTGCAGATTGCTGGGTTCCCAATGACATGGAAGCGAAAGAGATTCGATTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTCCGCAGTGATGTGAGGAATTTTCTTAGAGGTGAAACTCTTCTTAGCAACCTTGCAACACGACTTTGTGGGAGCGGAGACATGTATTCTGATGGAAGAGGCCCTGCGTACTCTTTCAATTATGTTGCCGGTAATTTCGGACTTTCACTTGTGGACTTAGTCAGCTTCAGCGGTGCGGCTGAGTTGAGTTGGAATTGCGGAGAAGAAGGACCTACTAATAGTACTGATGTCCTTGAAAGGCGACTCAAACAAATCCGCAATTTCCTATTCATCTTGTTCGTGTCATTAGGAGTACCTATTTTAAACATGGGAGATGAGTGTGGCCATTCCTCTGGTGGTTCTCTTGCCTATGGTAACACAAAACCCTTCAACTGGGCTGCTTTAAAAACAGGTTTTGGTAAACAAACCACCCAATTTATTTCCTTTTTGACTTCCTTGAGAATAAGGCGGAGTGATCTTCTTCAGAGTAGGAGCTTCTTAAAAGAAGAAAACATTGAATGGCGAGGAATCGAGGAGGCTCCGCCAAGATGGGAAGATCCATCCTGCAAGTTCCTAGCCATGACTTTGAAGGCCGAAAGAATCGAGCTTCAAGAGAGCTCTGTATCTTCTGATATATTAGGGGATCTATTTGTTGCTTTCAATGCAGATGATCGTCCAGAAACTGTAGTTTTACCCTTGCCTCCAGAAGGAATGTCATGGTACCGCATAGTCGATACTGCTCTTCCATTTCCTGGCTTTTTCTTGAACAATGGTGATCTTGTCCTAGAGCAAATATCAGGTTTGTCTACTTATGAAATGAAGTCTTACAGCTGCATTTTGTTTGAGGCAAATATTAGTCCTAGTTAG 2541 0.3998 MTNLLPSFSFSVIPLNQHKYETKCSFFHTSLDQNQLVSKSLQDLIIPFSLNFTSKLCATSSRLSIQETEQKQSEDIKTALPYLFRTEIGEGLVKVYVKKKKDTYFVYIEVSSLVLSNVERETFVLCWGVYSHDSSTVDSGKGMNVSPFVKNSLGKFSVELEFGVGQVPFYLSFLLRLSGLEIRTHLKRNFCVPVGFIRGCPSPLGISFFPDGSINFAVFSRHAEGVVLCLYDNNDDTGVKKPALELDLDPYVNRSGDIWHVSLENAKTFVSYGYRFRGVNSNNSYAECVVLDPYARIVGNSFPNGIGSVKNLGFLRKEPAFDWGDDYHPNLDMEKLVVYRLNVKRFTEHESSNLSGDLAGTFSGLAKKLQHFKDLGVNAVLLEPIFTFDEEKGPYFPCHFFSPTNLYGPSGDPVSTINSMKEMVKTMHANGIEVIMEVVFSNTAEVGALQGIDDLSYYYANGVCGLKVHSALNCNYPIMQNLILDSLRHWVTEFHIDGFSFVNASHLLRGYHGEYLSRPPLVEAIAFDPVLWKTKIIADCWVPNDMEAKEIRFPHWMRWAEINTNFRSDVRNFLRGETLLSNLATRLCGSGDMYSDGRGPAYSFNYVAGNFGLSLVDLVSFSGAAELSWNCGEEGPTNSTDVLERRLKQIRNFLFILFVSLGVPILNMGDECGHSSGGSLAYGNTKPFNWAALKTGFGKQTTQFISFLTSLRIRRSDLLQSRSFLKEENIEWRGIEEAPPRWEDPSCKFLAMTLKAERIELQESSVSSDILGDLFVAFNADDRPETVVLPLPPEGMSWYRIVDTALPFPGFFLNNGDLVLEQISGLSTYEMKSYSCILFEANISPS 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02524 846 CDD AmyAc_plant_IsoA 332 720 IPR044096 GO:0019156|GO:0019252
Vifa5g02524 846 SUPERFAMILY E set domains 199 329 IPR014756 -
Vifa5g02524 846 PANTHER GLYCOGEN DEBRANCHING ENZYME 160 842 - -
Vifa5g02524 846 Gene3D Immunoglobulins 193 309 IPR013783 -
Vifa5g02524 846 SUPERFAMILY (Trans)glycosidases 319 715 IPR017853 -
Vifa5g02524 846 Gene3D Glycosidases 317 727 - -
Vifa5g02524 846 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 203 295 IPR004193 GO:0004553|GO:0005975
Vifa5g02524 846 CDD E_set_GDE_Isoamylase_N 202 340 IPR044505 -
Vifa5g02524 846 SUPERFAMILY Glycosyl hydrolase domain 727 841 - -
Vifa5g02524 846 Pfam Alpha amylase, catalytic domain 360 446 IPR006047 GO:0005975
Vifa5g02524 846 SMART aamy 340 714 IPR006047 GO:0005975
Vifa5g02524 846 Gene3D - 728 845 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02524 Vifa-Chr5 836107292 836109832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02524 16 841 Glycoside Hydrolase AT1G03310 54.312 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02524 K01214 - gmx:100777953 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02524 5 836107292 836109832 Vifa5g02524 5 836107292 836109832 ECH