Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02523 ATGAAAGCCCTTCATGGTTCCATTAATCATTACCAAAAAGAAGCTCATAGGGACATGCTTACAAAACGAAGCCATAAAGGACATAAACAACGAGGCCTTAAGCTCATCAGCGGAGGCTGGGGGTTAAAATTGTCGAGCCCTTTGTTTTCTACCACTACCACTGGCTTTTTCGCTTTCACTCTCTATAAGTTCATAGTAGCGAAAATGTTGTTTTTCTCGTACTTCAAAGATTTGGTGGGAAGAGAAGTGACGGTAGAACTCAAGAACGATTTGGCCATCAGAGGGACATTGCATTCTGTTGATCAATACCTTAATATCAAGCTCGAAAATACTCGTGTTGTTGATCAAGACAAGTACCCTCACATGCTTTCTGTAAGGAACTGCTTCATCAGAGGATCGGTGGTGAGATATGTGCAATTGCCTCCAGAAGGTGTGGACATTGAACTATTGCACGATGCCACAAGGAGAGAAGCCCGGAGTGGTTGA 486 0.4321 MKALHGSINHYQKEAHRDMLTKRSHKGHKQRGLKLISGGWGLKLSSPLFSTTTTGFFAFTLYKFIVAKMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARSG 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02523 161 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 69 160 IPR016654 GO:0006397
Vifa5g02523 161 Pfam LSM domain 75 139 IPR001163 -
Vifa5g02523 161 SUPERFAMILY Sm-like ribonucleoproteins 71 159 IPR010920 -
Vifa5g02523 161 CDD LSm2 70 158 IPR016654 GO:0006397
Vifa5g02523 161 FunFam U6 snRNA-associated Sm-like protein LSm2 69 161 - -
Vifa5g02523 161 Gene3D - 61 160 - -
Vifa5g02523 161 SMART Sm3 73 140 IPR001163 -
Vifa5g02523 161 ProSiteProfiles Sm domain profile. 70 144 IPR047575 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02523 K12621 - qsu:112008381 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02523 5 835955724 835961808 Vifa5g02523 5 835955724 835961808 ECH