LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g02520	ATGGGTAAAATTCTCAGAGAAACCGCGAAGCCATCGTCCAGTTCGTGTTCTCCGTCTTCCTCATCGGAACCGGCGACAACCTCGTCGACTTCAATCACGGAGACAGTGAAAGGCTCTCACCAGTTCAAGATCACGGGGTACTCGTTGTCCAAAGGGATCGGGATTGGGAAATACATCGCGTCGGATATATTCTCTGTGGGTGGGTATGATTGGGCCATCTATTTCTACCCTGATGGGAAGAGTGTTGAGGATAATGCTACCTATGTGTCCCTCTTCATCGCCCTCGCTAGCGAAGGTACTGATGTTAGGGCTCTTTTTGAGTTGACCCTTTTGGATCAGAGTGGGAAGGAGAGGCATAAGGTTCATAGTCATTTCGAGAGGACTCTCGAAAGCGGGCCTTACACATTGAAATACCGCGGCAGTATGTGGGGTTACAAGCGGTTTTTTAAGAGGACAGCTTTAGAGACTTCAGACTATCTTAAAGATGACTGCCTCTCTGTAAATTGTAGTGTTGGTGTTGTGAGGTCACGAACGGAAGGCCCAAAGATATATTCCATTGCCATACCACCGTCTAACATTGGTCACCAATTTGGTCAACTGCTGGAAACTGGTATAGGAAATGATGTGAGTTTTGAAGTGGATGGGGAAGTTTTTAATGCTCATAAATTGGTGCTGGCAGCTCGTTCACCTGTTTTCAGAGCCCAGCTTTTTGGTCCTATGAAAGATCACAATACCCGGTGTATTAAAGTTGAAGACATGGAAGCTCCAGTTTTTAAGGCATTGCTTCATTTTATATACTGGGACTCACTGCCTGACATGCAAGAGCTTACCGGTATGAACACAAAATGGGCAACAACCTTGATGGCCCAACATCTTCTAGCGGCTGCTGATCGGTATGCCTTAGAGAGGCTCAGGCTTATCTGTGAACAGAATCTATGTGAAGATGTTGCCATAAATACTGTGGCTACGACTTTAGCCTTGGCAGAGCAGCACCACTGTTTCCAGCTGAAAGCAGTCTGTCTCAAGTTTATTGCTACCTCCGAGAATCTCAGAGCTGTGATGCAAACTGATGGATTTGAGTACTTGAAGGAAAGTTGCCCGCCTGTTCTGACTGAGCTATTGGAGTATGTGGCCAGATTTACCGAGCATTCAGACTTTATGTGCAAGCATAGGAATGAGGCAATACTTGATGGCAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGCTTTAG	1233	0.4631	MGKILRETAKPSSSSCSPSSSSEPATTSSTSITETVKGSHQFKITGYSLSKGIGIGKYIASDIFSVGGYDWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYSIAIPPSNIGHQFGQLLETGIGNDVSFEVDGEVFNAHKLVLAARSPVFRAQLFGPMKDHNTRCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGMNTKWATTLMAQHLLAAADRYALERLRLICEQNLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPPVLTELLEYVARFTEHSDFMCKHRNEAILDGSDINGRRVKQRL	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g02520	410	Pfam	BTB/POZ domain	198	314	IPR000210	GO:0005515
	Vifa5g02520	410	Gene3D	-	316	393	-	-
	Vifa5g02520	410	Gene3D	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	35	175	IPR008974	GO:0005515
	Vifa5g02520	410	SMART	math_3	42	154	IPR002083	GO:0005515
	Vifa5g02520	410	SMART	BTB_4	207	316	IPR000210	GO:0005515
	Vifa5g02520	410	ProSiteProfiles	BTB domain profile.	207	266	IPR000210	GO:0005515
	Vifa5g02520	410	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vifa5g02520	410	FunFam	BTB-POZ and math domain 1	316	393	-	-
	Vifa5g02520	410	PANTHER	BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1	26	374	IPR045005	GO:0016567
	Vifa5g02520	410	FunFam	BTB-POZ and math domain 1	183	310	-	-
	Vifa5g02520	410	CDD	MATH	38	171	IPR002083	GO:0005515
	Vifa5g02520	410	CDD	BTB_POZ_BPM_plant	193	313	-	-
	Vifa5g02520	410	MobiDBLite	consensus disorder prediction	8	32	-	-
	Vifa5g02520	410	CDD	BACK_AtBPM-like	313	376	IPR034090	-
	Vifa5g02520	410	ProSiteProfiles	MATH/TRAF domain profile.	37	171	IPR002083	GO:0005515
	Vifa5g02520	410	SUPERFAMILY	TRAF domain-like	34	173	-	-
	Vifa5g02520	410	Gene3D	Potassium Channel Kv1.1; Chain A	183	311	IPR011333	-
	Vifa5g02520	410	SUPERFAMILY	POZ domain	184	314	IPR011333	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g02520	Vifa-Chr5	834861011	834864265	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g02520	K10523		-	gmx:102668882	743.421

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa5g02520	5	834861011	834864265	Vifa5g02520	5	834861011	834864265	ECH
	Vifa5g02520	5	834861011	834864265	Vifa3g01462	3	383541995	383546170	PCT