Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02485 ATGGACGACGAAGAGGAACAACAAAAACTTCCAGATCTCGTAAAAGCCCTCGTCCACCATCTTCTCTCTCAAAACCTCCCCCCAAACTCCCCGCCCTTAAACCCTAACTCCTCTCACTTCCGAAACTCCCTCCGTTACGCCCACCGCATCCTCTCCAGCCACCTCTCTCCCTCCATAACCCCCGACGCCGCCGCCGTCGCCGAATCCATCAAACGCCGTCTCGCCACCGAAGGTAGATCCTCCGAAGCCCTCTCTTTCGCTGACCTATACACCAAATTCGTTTCCAAAGCTGCCGATGTTGATAATAAATGGGCCTTACTTCATCTCTTTAACATCATTTCTCAAGATCGTAAAATCGCTGTTAAATCTCAACTCGATTCTTCCGTTTTTCTTCCGAATTTAGCTATCTCCGATAACAACGCTGTTAAATCCCCACGCAAGGGATGGAGCGATGGTGTTGTTGTTCTTGCTAAGGATCCTGATAATCGACGCGACATTGCGTTTCGGGAGTATGTGAAGTTGGTTAAGGAGGAGAATGATGTGACGGAGGAGGCTATGGTGACTGACGTGCTTTATGCTTGTCAAGGAGTTGATGGTAAGTATGTGAAATTTGATAATGAGAATAGCTGTTATGTTTTGTTGGATTCGGTTAGGGTTTCGAGGGGAACTACGGGTATGGTTTATAGGCTTTGTGAGTTAGGGGTTTTGTTTAAGAAGGTTATTGGGTATATAGAGCAGAGTTTGGGTCGTTTTCAGACAGAAGATGTGGGAACTGTTGGTCAGGCTTTTTGTTCTGCTTTGCAGAATGAGTTGAGTGATTATTATAAGTTGTTGGCTGTGCTTGAGGCTCATTCGTCGAATCCAATTCCTTTGTTGTCTGAATCTGGGAATTCTGTTAATTATCTTTCGTTGAGGAGATTGGCTGTTTGGCTTGCTGAGCCGATGGTGAAGATGAAGTTGATGGCTGATTTGGTTGAGAAATGTAGGGTTTTGCGCGGAGGTGCCATGGCGGGTGCTATTCACTTGCACGCGAGACATGGGGATCCGATGGTTCATGAGTTTATGAAGAGGTTGCTTCAGCGTGTGTGTTCTCCGCTTTTTGAAATGGTTAAGAGGTGGGTTTTGGAAGGGGAGTTAGAAGATATATTTGCTGAGTTTTTCATTGTTGGGCAGCCTGTAAAAGCTGAATCTCTTTGGAGAGAGGGATATAGGCTCCATGATGTCATGCTTCCTTCTTTTATTTCAGCTTCTCTTGCTCAGAGGATTTTGAGGACTGGAAAGTCCATAAATTTTTTGCGTGTTTGCTGTGAGGATCGCGGTTGGGCTCATGCTGCAACTGAAGTTGCCATTGATACAGGGGCTACAGCAAGACGGGGTGGTTTTGGCTACGGGGAAACTGATACCCTTGAGTCGTTGGTTGATGAAGCTTCAAAAAGAATTGATAAGCATCTATTGGATGTAATTTATGAGAGGTATAAATTCAAAGAGCACTGTCTAGCAATTAAGCGGTATTTATTGCTTGGCCAAGGTGATTTTGTGCAATATCTGATGGATATTGTTGGGCCTGAGCTTTCTGGGCCAGCTAACACCATAAGCTCTTTCAAAGTTGCGGGATTGCTGGAAACTGCAATTCGAGCGTCAAATGCTCAGTATGACGACCCTGATATTTTGGATAGGCTCAGGGTCAAAATGATGCCACATGAAAGTGGTGATAGGGGCTGGGATGTATTCTCACTGGAATATGATGCAAGAGTACCGCTAGACACTGTGTTCACAGAGTCTGTGATGGCGAGGTATTTAAGAATTTTTAATTTTCTCTGGAAGCTTAAAAGAGTGGAACATGCACTTATTGGAGCCTGGAAGATCTTGAAACCAAACTGCATAACTTCTAATTCTTTTATCAGATTGCAAAGTTCAGTGAAGATGCAGTTAGTTTCAGCATTGAGGCGTTGTAAAGTTCTCTGGGTTGAAATTAATCACTTTATTTCAAACTTGCAGTACTATATAATGTTTGAAGTTTTGGAGATATCATGGTCAAACTTTTTAAGTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCATGAGAAATATATGGATTCAATTGTAGAGAAATCTCTTCTTGGAGAACTCTCGCAGTCTCTGTACAAGTCATTAGTGGTAATATTTGATCTTATATTACGTTTCCGGAGCCATGCAGATATTTTATATGAAGGCATTCACGAGTTGCAAGCAAAAATAACGGAGTCCTCCCTATCCTCTCGAGCCCAGCAGAAAACACGAAAGCAATCGAAAGACAAGTCATTGGATGAAGGATCCTGGATTGCTGATGGGAGGAAAGCCTTAACACAACGTGCTGGTGAATTTCTTCGGAAAATGGAACAAGATCTAGATGCAATTACCAAGGAGTATACGTCATTGCAAGAGGAATTCATTTCTCAGTTGCCTGTACAGCAGCATGTTGATCTTAAGTTTCTCTTTTTTCGTCTTGACTTCAATGATTTTTATAAGCGGGTTGTGTCGTAG 2535 0.4327 MDDEEEQQKLPDLVKALVHHLLSQNLPPNSPPLNPNSSHFRNSLRYAHRILSSHLSPSITPDAAAVAESIKRRLATEGRSSEALSFADLYTKFVSKAADVDNKWALLHLFNIISQDRKIAVKSQLDSSVFLPNLAISDNNAVKSPRKGWSDGVVVLAKDPDNRRDIAFREYVKLVKEENDVTEEAMVTDVLYACQGVDGKYVKFDNENSCYVLLDSVRVSRGTTGMVYRLCELGVLFKKVIGYIEQSLGRFQTEDVGTVGQAFCSALQNELSDYYKLLAVLEAHSSNPIPLLSESGNSVNYLSLRRLAVWLAEPMVKMKLMADLVEKCRVLRGGAMAGAIHLHARHGDPMVHEFMKRLLQRVCSPLFEMVKRWVLEGELEDIFAEFFIVGQPVKAESLWREGYRLHDVMLPSFISASLAQRILRTGKSINFLRVCCEDRGWAHAATEVAIDTGATARRGGFGYGETDTLESLVDEASKRIDKHLLDVIYERYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPELSGPANTISSFKVAGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLKRVEHALIGAWKILKPNCITSNSFIRLQSSVKMQLVSALRRCKVLWVEINHFISNLQYYIMFEVLEISWSNFLSEMEVAKDLDDLLAAHEKYMDSIVEKSLLGELSQSLYKSLVVIFDLILRFRSHADILYEGIHELQAKITESSLSSRAQQKTRKQSKDKSLDEGSWIADGRKALTQRAGEFLRKMEQDLDAITKEYTSLQEEFISQLPVQQHVDLKFLFFRLDFNDFYKRVVS 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02485 844 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 10 839 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Vifa5g02485 844 Gene3D - 495 838 IPR042241 -
Vifa5g02485 844 Pfam Gamma tubulin complex component C-terminal 496 839 IPR040457 GO:0043015
Vifa5g02485 844 Pfam Gamma tubulin complex component N-terminal 187 490 IPR041470 -
Vifa5g02485 844 Coils Coil 793 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02485 Vifa-Chr5 822105455 822108079 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02485 K16570 - gmx:100784710 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02485 5 822105455 822108079 Vifa5g02485 5 822105455 822108079 ECH